Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1395g00012 ATGGACTTGGATTTGGTAGCTCGCAATGTGGGACACTTAAAACTCATCAATTCCTTTCATGGGTCTCGGGTTTCTTTGAGAAGGGAAGCTGCGAGAGATGATGAGAAAGTGGTTTGGGAACTGGAACTGGAAGTTGGTGGTTCCAAAGACAATGATGGGGTAACAGTGGGTCTGAATGCAAAACCATGGATCCTTAAATGGGACGAAATTTCAAGCCCAATTAGTGCTCGAATTTTCGAACTTTGTGACACTGAATTGTTCCAAGAGACTCTGCAGAACTTTGAGGGTACCTCCAACTCAAATTGTGGCCATGAAGAAAATTCATCATATACCACAAATATATCTCTAGCTTTAGATGTAGACAATAAGATCAATAGCAATAGCAATATAGTCACCACCCCATCTAGTAATATTGCAACCACTACCAACACCAACACCAACAACAACACAACAAAAAGCAGTAACATGTGTATTATCTTTGACTCCCAAGAAGAAATTGATAATGACACCTCTGCCTCCATAGACTTCTCATCATCTCCAGCTTTTGTTGTTCCCCTACTTCTTCCAATCACAACAACTCAGCAGGAACAATTTGATTTCTATTCATCATCAGGTTCAGTTTTGAAGGGTCTCTCTCAGTATCCCACTAATCCTGTTGTAGCACCACTTATTGGGGCTCCATTATCATCTGTTTTTGAAGATGATTGCATATCTTCAATCCCTTCTTATGTGTCTCTTAACCCTTCATCTCCTTCTTGCTCTTATCTCAGTCCTGGCTTAGGAGTATCATACATGCCTCCTAGGCCACTTAATACTGCTGAAAGTTCTGGGTTATTTGGTGGGAGCATTCTACTTGGTTCTGAACTGCAGACACAAGAATTGGATTACCAAGGAGAAAATGGTGGAATATGTTGTACAGATTCAATTCAGAGGGTGTTTAACCAACCAGACCTTCAGGCATTTGGTTCTGAGAGTCAGAAACTGGTAGCTGGGGCTGGGAGTTCTGCCACTTTGGCACCAGAAATCTCAAGCTTGGAGGACTCTACCTTAAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATACATGAAGAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCATGCCGCAAAACATTGGCAGATAGCAGACCCCGAGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGCAGAGAGTCATGGACCAGCTTGTAGCAATCATGAAAAAGAAATAGTTATGAAAGAAGATGATGATATGGTGGATTCCTCAGATATCTTTGCCCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAATCTTGGATTTGA 1365 0.4103 MDLDLVARNVGHLKLINSFHGSRVSLRREAARDDEKVVWELELEVGGSKDNDGVTVGLNAKPWILKWDEISSPISARIFELCDTELFQETLQNFEGTSNSNCGHEENSSYTTNISLALDVDNKINSNSNIVTTPSSNIATTTNTNTNNNTTKSSNMCIIFDSQEEIDNDTSASIDFSSSPAFVVPLLLPITTTQQEQFDFYSSSGSVLKGLSQYPTNPVVAPLIGAPLSSVFEDDCISSIPSYVSLNPSSPSCSYLSPGLGVSYMPPRPLNTAESSGLFGGSILLGSELQTQELDYQGENGGICCTDSIQRVFNQPDLQAFGSESQKLVAGAGSSATLAPEISSLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFAESHGPACSNHEKEIVMKEDDDMVDSSDIFAHISGVNSFKCNYSIQSWI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1395g00012 454 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
Gabi1395g00012 454 Pfam CCT motif 360 402 IPR010402 GO:0005515
Gabi1395g00012 454 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 222 415 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1395g00012 Gabi-Chr1395 145858 153232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1395g00012 339 409 C2C2-CO-like Transcription Factor Family AT5G24930 40.845 1.26e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1395g00012 CCT 6.2e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1395g00012 - - gmx:100793417 564.688