Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1395g00011 ATGAAGTATACCTTACAATTTTTGGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCTTGTCGGGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTTCTTGCACAGGCAGAAAGGCAGTTCCCTCTTTCTGCACCAAATGCCACAACAGCAAATGTCCCTGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCTGGTGCAAAGAAAATGCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACTGACTGTAATGCTGCTCTTTCCCAGCAGAGGAAAAAGCGTCAGATTCCTTCAACTTTGGCTACTGTTGAAGCTCTAGAGGCATATACCCAAATATCTAGCCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACGAATGCTGTAATTTTTGACCGACCATCAGGACAGATATTATCTACACTTAGTGGTCACTCAAAAAAGGTAACCAGCGTAAAGTTTGTAGATCAGGGCAATTCGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGTTTATGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCACGCCACCAATAATTACTTTGTGACTGCTTCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCGGGGACATGTCTGACTCAGGTTTTGGACTCTTCAGGTTCTTCTGAAGGCTATACGTCTGCAGCCTTTCATCCAGATGGTCTCATTCTTGGAACGGGCACAACTGATGCTCTTGTCAAAATCTGGGATGTAAAAAGTCAGGCAAATGTTGCCAAGTTTGATGGACATGTAGGGCCAGTGACCGCCATATCCTTTTCTGAGAATGGATACTTCCTTGCGACTGCAGCTAATGATGGTGTAAAGCTTTGGGATTTACGTAAATTGAAAAACTTCCGGAACTTTGCTCCATATGACTCAGAAACTCCAACAAACTGCGTGGAGTTCGACCATAGTGGATCCTACCTTGCAGTTGCTGGCTCTGATATTAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAGGCCACTTGTGTAAAATTTGGTCCAGATTCAAAATACATGGCGGTGGGGTCAATGGACAGGAATCTTCGAATATTTGGTATGCCTGGCGAAGAAATTCCCACCGAGTCATAA 1368 0.4276 MKYTLQFLEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSFLAQAERQFPLSAPNATTANVPVLSNGKRAAEDEELAPGAKKMHPGISSSIISELTDCNAALSQQRKKRQIPSTLATVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVDQGNSFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVLDSSGSSEGYTSAAFHPDGLILGTGTTDALVKIWDVKSQANVAKFDGHVGPVTAISFSENGYFLATAANDGVKLWDLRKLKNFRNFAPYDSETPTNCVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDSKYMAVGSMDRNLRIFGMPGEEIPTES 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1395g00011 455 FunFam pre-mRNA-processing factor 19 129 446 - -
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 224 - -
Gabi1395g00011 455 CDD WD40 156 444 - -
Gabi1395g00011 455 Pfam WD domain, G-beta repeat 320 355 IPR001680 GO:0005515
Gabi1395g00011 455 Pfam WD domain, G-beta repeat 232 267 IPR001680 GO:0005515
Gabi1395g00011 455 Pfam WD domain, G-beta repeat 186 223 IPR001680 GO:0005515
Gabi1395g00011 455 Pfam WD domain, G-beta repeat 405 444 IPR001680 GO:0005515
Gabi1395g00011 455 Coils Coil 45 65 - -
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 224 IPR001680 GO:0005515
Gabi1395g00011 455 PANTHER PRE-MRNA-PROCESSING FACTOR 19 9 445 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Gabi1395g00011 455 Gene3D - 129 446 IPR015943 GO:0005515
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 317 - -
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
Gabi1395g00011 455 ProSitePatterns Trp-Asp (WD) repeats signature. 301 315 IPR019775 -
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 364 IPR001680 GO:0005515
Gabi1395g00011 455 SUPERFAMILY WD40 repeat-like 151 444 IPR036322 GO:0005515
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 357 - -
Gabi1395g00011 455 SMART WD40_4 358 397 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 142 182 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 404 445 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 230 269 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 317 355 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 185 224 IPR001680 GO:0005515
Gabi1395g00011 455 SMART WD40_4 273 314 IPR001680 GO:0005515
Gabi1395g00011 455 Pfam Prp19/Pso4-like 8 61 IPR013915 -
Gabi1395g00011 455 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1395g00011 Gabi-Chr1395 81606 88647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1395g00011 9 450 U-box Gene Family AT1G04510 74.208 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1395g00011 K10599 - gmx:100527039 851.662