Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1395g00010 ATGAACTGCTCCATTTCCGGTGAGGTTCCGGAGGAGCCGGTGGTTTCTAAGAGCTCCGGTCTCCTCTTCGAGAAGCGTTTGATTGAGAGACATATATCGGATTATGGGAAGTGTCCAATTACCGGAGAACCGCTTACTTTGGATGACATTGTACCAATCAAAACAGGCAAGATAGTGAAGCCCAGACCTGTGCAGGCAGCTAGCATCCCTGGCATGCTTGGATTGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAACAATTGCACACAGCAAGGCAAGAGCTAAGTCATGCTTTATATCAGCATGATGCTGCTTGTCGGGTGATTGCTAGACTTAAAAAGGAACGAGATGAAGCTAGGTCTTTTCTTGCACAGGCAGAAAGGCAGTTCCCTCTTTCTGCACCAAATGCCACAACAGCAAATGTCCCTGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAGCTGGCACCTGGTGCAAAGAAAATGCATCCTGGAATATCTTCTAGCATAATTTCTGAGCTAACTGACTGTAATGCTGCTCTTTCCCAGCAGAGGAAAAAGCGTCAGATTCCTTCAACTTTGGCTACTGTTGAAGCTCTAGAGGCATATACCCAAATATCTAGCCATCCCTTTCACAAAACAAACAAACAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGACTTAATTGCAACTGGAGGTATTGATACGAATGCTGTAATTTTTGACCGACCATCAGGACAGATATTATCTACACTTAGTGGTCACTCAAAAAAGGTAACCAGCGTAAAGTTTGTAGATCAGGGCAATTCGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGTTTATGGCAAGGGTCAGATGATGGTAACTATAACTGCAGGCACATCTTAAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCACGCCACCAATAATTACTTTGTGACTGCTTCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCGGGGACATGTCTGACTCAGGTTTTGGACTCTTCAGGTTCTTCTGAAGGCTATACGTCTGCAGCCTTTCATCCAGATGGTCTCATTCTTGGAACGGGCACAACTGATGCTCTTGTCAAAATCTGGGATGTAAAAAGTCAGGCAAATGTTGCCAAGTTTGATGGACATGTAGGGCCAGTGACCGCCATATCCTTTTCTGAGAATGGATACTTCCTTGCGACTGCAGCTAATGATGGTGTAAAGCTTTGGGATTTACGTAAATTGAAAAACTTCCGGAACTTTGCTCCATATGACTCAGAAACTCCAACAAACTGCGTGGAGTTCGACCATAGTGGATCCTACCTTGCAGTTGCTGGCTCTGATATTAGGATTTACCAAGTTGCAAATGTGAAATCTGAATGGAACTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAGGCCACTTGTGTAAAATTTGGTCCAGATTCAAAATACATGGCGGTGGGGTCAATGGACAGGAATCTTCGAATATTTGGTATGCCTGGCGAAGAAATTCCCACCGAGTCATAA 1578 0.4392 MNCSISGEVPEEPVVSKSSGLLFEKRLIERHISDYGKCPITGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGLFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSFLAQAERQFPLSAPNATTANVPVLSNGKRAAEDEELAPGAKKMHPGISSSIISELTDCNAALSQQRKKRQIPSTLATVEALEAYTQISSHPFHKTNKQGIISLDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVDQGNSFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVLDSSGSSEGYTSAAFHPDGLILGTGTTDALVKIWDVKSQANVAKFDGHVGPVTAISFSENGYFLATAANDGVKLWDLRKLKNFRNFAPYDSETPTNCVEFDHSGSYLAVAGSDIRIYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDSKYMAVGSMDRNLRIFGMPGEEIPTES 525
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi1395g00010 525 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 515 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Gabi1395g00010 525 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Gabi1395g00010 525 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Gabi1395g00010 525 SUPERFAMILY WD40 repeat-like 221 514 IPR036322 GO:0005515
Gabi1395g00010 525 SUPERFAMILY RING/U-box 1 53 - -
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Gabi1395g00010 525 Pfam WD domain, G-beta repeat 475 514 IPR001680 GO:0005515
Gabi1395g00010 525 Pfam WD domain, G-beta repeat 390 425 IPR001680 GO:0005515
Gabi1395g00010 525 Pfam WD domain, G-beta repeat 302 337 IPR001680 GO:0005515
Gabi1395g00010 525 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Gabi1395g00010 525 Gene3D - 199 516 IPR015943 GO:0005515
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 387 - -
Gabi1395g00010 525 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Gabi1395g00010 525 Coils Coil 115 135 - -
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 434 IPR001680 GO:0005515
Gabi1395g00010 525 CDD RING-Ubox_PRP19 1 54 - -
Gabi1395g00010 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Gabi1395g00010 525 FunFam pre-mRNA-processing factor 19 199 516 - -
Gabi1395g00010 525 CDD WD40 226 514 - -
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 212 252 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 300 339 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 255 294 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 428 467 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 474 515 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 343 384 IPR001680 GO:0005515
Gabi1395g00010 525 SMART WD40_4 387 425 IPR001680 GO:0005515
Gabi1395g00010 525 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Gabi1395g00010 525 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Gabi1395g00010 525 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi1395g00010 Gabi-Chr1395 81606 90029 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1395g00010 1 520 U-box Gene Family AT1G04510 75.385 0.0 819
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1395g00010 K10599 - gmx:100527039 1003.05