Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1393g00002 ATGATGAGCATGAAAACCAGTAACAGGAAAATGAGAAAGGATTTTATGTGCCACTCTCAGACTTCAACAGCTGTGTGCATGACTACCCGTGATCCTCAATCTGTAATTGATCCTAGGAAGCTTGACAGAAGTGTTTTTGTTGATGATACCAGATTGATCAACTATGCTAAGTACTCCAAACTTGTTGAGTTTCCCAAGTCCAATGCAGTTCCAAATATTAATAATAGAGGGCAGGATCAAGATCAAGTGAATGAATCAAGGGAACTTCAGAAAACACCAACGATTGCATGTCTTTCAGTTGGGGTTTTGGCTAAAAAGAGTGACTCTGTTAAGGTGAAGGAAACGATTCGGTTGTTTAACAAACACTATCTTCATTTTATTCAGGAAGAGGAGACGAGATGTGGGAAGATACAAGCTGAAAGGAAAGAAGCTAAAAAGGTTTTAAAATCTAATGAGAAGAAAGCAGCTAAAAATGTTTCAAAATCTAAGAAAGGCGCTCCACCTGAAGATTTAAAGTCCAAAGCCAAGAGGCCTGATCTGAAGGCCATACCAAAGATGATGAATAATAATGAGATACTGTACCCTGTGAAAAGAGTTGGCAACATTCCAGGTGTTGAAGTTGGGCATCAATTCTGTTCTCGTTGTGAAATGGTAGCAGTTGGCATGCATAGTCATTGGCTAAACGGGATTGATTCTATGTCCTTGTACAATAAAAAAGTGGACAACAGCTACAAATTCCCTGTTGCTGTGTGCATTGTTTTGTCTGGCATGTATGAGGATGATGTGGATAACGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACCGGTGATAAGCGTCAAATTGCGGATCAACAATTAAAGTCGGGTAATCTAGCACTCAAGAACTGCGTTGAGCAATTAGTTCCTGTTAGGGTGGTTCGTGGTCATGAATCTTCGAGCAGTTACTCTGGTAAAGTCTACACTTATGATGGTTTGTACAAGGTTGTCAACTATTGGCTAGAAAAGGGAATATCTGGATTTATAGTATATAAATTTCGACTTAGGAGACTTGAAGGGCAGTCTACATTAACCACTAATCAGGTTTATTTCACTCGTGGACCCATACCTCAGTCATCTGAACAAATACAAGGGTTGGTATGTAAGGATATCACTGGAGGTCAGGAACATCCACCCATTCCTGCTACGAATTTGGTTGATGACCCCCCTGTTTCACCCACAGGTTTCACATATTATAAGTCCGTCAAGGTTGCAAATAATGTGACGGTTCCCAAAAATGCTACTGGGTGCAAATGCAAAGGCTTTTGTATTGATCCGAAAACTTGTGAATGTGCGTTGCTTAATGGCTCAGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTAGTTTTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTTTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCCGTTAGAACTTGGGATTTTATACCTTCTGGAGCCCCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGACATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCAAATAATGTAGCAGTTCCTGCAAATCTTTTGGACAAATGCGATGACCAAGGTTCTGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGCGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAAATTGGCTCGAGTAGTGTTGTTTTCTTCCGACAATATATCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGCGCTTGATAGTGTCTTTGACTCCAATGGGAAGATAAAGCAAATGCCATGCTACTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 2028 0.4132 MMSMKTSNRKMRKDFMCHSQTSTAVCMTTRDPQSVIDPRKLDRSVFVDDTRLINYAKYSKLVEFPKSNAVPNINNRGQDQDQVNESRELQKTPTIACLSVGVLAKKSDSVKVKETIRLFNKHYLHFIQEEETRCGKIQAERKEAKKVLKSNEKKAAKNVSKSKKGAPPEDLKSKAKRPDLKAIPKMMNNNEILYPVKRVGNIPGVEVGHQFCSRCEMVAVGMHSHWLNGIDSMSLYNKKVDNSYKFPVAVCIVLSGMYEDDVDNAEDVVYTGQGGHNLTGDKRQIADQQLKSGNLALKNCVEQLVPVRVVRGHESSSSYSGKVYTYDGLYKVVNYWLEKGISGFIVYKFRLRRLEGQSTLTTNQVYFTRGPIPQSSEQIQGLVCKDITGGQEHPPIPATNLVDDPPVSPTGFTYYKSVKVANNVTVPKNATGCKCKGFCIDPKTCECALLNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRTWDFIPSGAPVCEYTGILARTEDMESVLENNYIFDIDCLQTIKGLGGRERRSNNVAVPANLLDKCDDQGSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVVLFSSDNISPLQELTYDYGYALDSVFDSNGKIKQMPCYCGAPGCRKRLF 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1393g00002 675 SUPERFAMILY PUA domain-like 182 370 IPR015947 -
Gabi1393g00002 675 ProSiteProfiles Post-SET domain profile. 659 675 IPR003616 -
Gabi1393g00002 675 Gene3D - 184 369 IPR036987 -
Gabi1393g00002 675 SMART set_7 496 651 IPR001214 GO:0005515
Gabi1393g00002 675 SUPERFAMILY SET domain 382 652 IPR046341 -
Gabi1393g00002 675 ProSiteProfiles YDG domain profile. 200 353 IPR003105 -
Gabi1393g00002 675 Pfam Pre-SET motif 388 488 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00002 675 ProSiteProfiles SET domain profile. 496 645 IPR001214 GO:0005515
Gabi1393g00002 675 SMART preset_2 384 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00002 675 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 675 IPR025794 GO:0016571
Gabi1393g00002 675 Coils Coil 127 147 - -
Gabi1393g00002 675 ProSiteProfiles Pre-SET domain profile. 431 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00002 675 Pfam SAD/SRA domain 199 357 IPR003105 -
Gabi1393g00002 675 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 72 667 - -
Gabi1393g00002 675 MobiDBLite consensus disorder prediction 147 180 - -
Gabi1393g00002 675 SMART G9a_1 195 357 IPR003105 -
Gabi1393g00002 675 SMART PostSET_3 659 675 IPR003616 -
Gabi1393g00002 675 Gene3D SET domain 376 675 IPR046341 -
Gabi1393g00002 675 Pfam SET domain 507 645 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1393g00002 Gabi-Chr1393 787 13960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1393g00002 186 675 EF-hand Containing Proteins AT5G13960 64.706 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1393g00002 SAD_SRA 8.1e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1393g00002 K11420 - gmx:100796701 942.184