Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1393g00001 ATGATGAGCATGAAAACCAGTAACAGGAAAATGAGAAAGGATTTTATGTGCCACTCTCAGACTTCAACAGCTGTGTGCATGACTACCCGTGATCCTCAATCTGTAATTGATCCTAGGAAGCTTGACAGAAGTGTTTTTGTTGATGATACCAGATTGATCAACTATGCTAAGTACTCCAAACTTGTTGAGTTTCCCAAGTCCAATGCAGTTCCAAATATTAATAATAGAGGGCAGGATCAAGATCAAGTGAATGAATCAAGGGAACTTCAGAAAACACCAACGATTGCATGTCTTTCAGTTGGGGTTTTGGCTAAAAAGAGTGACTCTGTTAAGGTGAAGGAAACGATTCGGTTGTTTAACAAACACTATCTTCATTTTATTCAGGAAGAGGAGACGAGATGTGGGAAGATACAAGCTGAAAGGAAAGAAGCTAAAAAGGTTTTAAAATCTAATGAGAAGAAAGCAGCTAAAAATGTTTCAAAATCTAAGAAAGGCGCTCCACCTGAAGATTTAAAGTCCAAAGCCAAGAGGCCTGATCTGAAGGCCATACCAAAGATGATGAATAATAATGAGATACTGTACCCTGTGAAAAGAGTTGGCAACATTCCAGGTGTTGAAGTTGGGCATCAATTCTGTTCTCGTTGTGAAATGGTAGCAGTTGGCATGCATAGTCATTGGCTAAACGGGATTGATTCTATGTCCTTGTACAATAAAAAAGACAACAGCTACAAATTCCCTGTTGCTGTGTGCATTGTTTTGTCTGGCATGTATGAGGATGATGTGGATAACGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACCGGTGATAAGCGTCAAATTGCGGATCAACAATTAAAGTCGGGTAATCTAGCACTCAAGAACTGCGTTGAGCAATTAGTTCCTGTTAGGGTGGTTCGTGGTCATGAATCTTCGAGCAGTTACTCTGGTAAAGTCTACACTTATGATGGTTTGTACAAGGTTGTCAACTATTGGCTAGAAAAGGGAATATCTGGATTTATAGTATATAAATTTCGACTTAGGAGACTTGAAGGGCAGTCTACATTAACCACTAATCAGGTTTATTTCACTCGTGGACCCATACCTCAGTCATCTGAACAAATACAAGGGTTGGTATGTAAGGATATCACTGGAGGTCAGGAACATCCACCCATTCCTGCTACGAATTTGGTTGATGACCCCCCTGTTTCACCCACAGGTTTCACATATTATAAGTCCGTCAAGGTTGCAAATAATGTGACGGTTCCCAAAAATGCTACTGGGTGCAAATGCAAAGGCTTTTGTATTGATCCGAAAACTTGTGAATGTGCGTTGCTTAATGGCTCAGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTAGTTTTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTCAAAGAGGACTTAGATATCGTTTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCCGTTAGAACTTGGGATTTTATACCTTCTGGAGCCCCAGTTTGTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGACATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCAAATAATGTAGCAGTTCCTGCAAATCTTTTGGACAAATGCGATGACCAAGGTTCTGAAAGTGTGCCGGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGCGAGCCTAATCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAAATTGGCTCGAGTAGTGTTGTTTTCTTCCGACAATATATCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGCGCTTGATAGTGTCTTTGACTCCAATGGGAAGATAAAGCAAATGCCATGCTACTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 2025 0.4128 MMSMKTSNRKMRKDFMCHSQTSTAVCMTTRDPQSVIDPRKLDRSVFVDDTRLINYAKYSKLVEFPKSNAVPNINNRGQDQDQVNESRELQKTPTIACLSVGVLAKKSDSVKVKETIRLFNKHYLHFIQEEETRCGKIQAERKEAKKVLKSNEKKAAKNVSKSKKGAPPEDLKSKAKRPDLKAIPKMMNNNEILYPVKRVGNIPGVEVGHQFCSRCEMVAVGMHSHWLNGIDSMSLYNKKDNSYKFPVAVCIVLSGMYEDDVDNAEDVVYTGQGGHNLTGDKRQIADQQLKSGNLALKNCVEQLVPVRVVRGHESSSSYSGKVYTYDGLYKVVNYWLEKGISGFIVYKFRLRRLEGQSTLTTNQVYFTRGPIPQSSEQIQGLVCKDITGGQEHPPIPATNLVDDPPVSPTGFTYYKSVKVANNVTVPKNATGCKCKGFCIDPKTCECALLNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRTWDFIPSGAPVCEYTGILARTEDMESVLENNYIFDIDCLQTIKGLGGRERRSNNVAVPANLLDKCDDQGSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKLARVVLFSSDNISPLQELTYDYGYALDSVFDSNGKIKQMPCYCGAPGCRKRLF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1393g00001 674 SUPERFAMILY PUA domain-like 182 369 IPR015947 -
Gabi1393g00001 674 ProSiteProfiles YDG domain profile. 200 352 IPR003105 -
Gabi1393g00001 674 ProSiteProfiles Pre-SET domain profile. 430 492 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00001 674 ProSiteProfiles SET domain profile. 495 644 IPR001214 GO:0005515
Gabi1393g00001 674 SUPERFAMILY SET domain 381 651 IPR046341 -
Gabi1393g00001 674 MobiDBLite consensus disorder prediction 148 181 - -
Gabi1393g00001 674 Gene3D - 184 368 IPR036987 -
Gabi1393g00001 674 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 674 IPR025794 GO:0016571
Gabi1393g00001 674 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 72 666 - -
Gabi1393g00001 674 SMART PostSET_3 658 674 IPR003616 -
Gabi1393g00001 674 Pfam SAD/SRA domain 199 356 IPR003105 -
Gabi1393g00001 674 Coils Coil 127 147 - -
Gabi1393g00001 674 Pfam Pre-SET motif 387 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00001 674 Gene3D SET domain 375 674 IPR046341 -
Gabi1393g00001 674 ProSiteProfiles Post-SET domain profile. 658 674 IPR003616 -
Gabi1393g00001 674 Pfam SET domain 506 644 IPR001214 GO:0005515
Gabi1393g00001 674 SMART G9a_1 195 356 IPR003105 -
Gabi1393g00001 674 SMART preset_2 383 479 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi1393g00001 674 SMART set_7 495 650 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1393g00001 Gabi-Chr1393 787 13960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1393g00001 186 674 EF-hand Containing Proteins AT5G13960 64.909 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi1393g00001 SAD_SRA 5.4e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1393g00001 K11420 - gmx:100796701 946.036