Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1390g00007 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTATATAGAGAATCATGGAACTGGTGGGAATTGGATTGCACTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCACGGAGAATTCTCAGATGAGGAAGACAGAATAATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTACCTGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTAAAGAAGAAGCTAATGGGGTTGCTTCCTGAATCTCATCAAAGAAAACCACCCTATCATCAATCCTCTCCTCAAAACCCACCACCATTTCCTTCTCATTCACTTTCCTCATCAATTTATGGAGATTATTGCAGCTCTTATTATAGCCCAGCAGCAACCACATCTTTCACAGGCCTTGAACCAATTTCTGTTCCTTCAAGTAATTACACAAACACAAGCTGCACAACAACCTCAATTTCTCTCCCATTTAACCAAAACCAAGAGTCCTTGGTTAGTGTTAGTCCCATGCAATATTACCCTATCACAACAGTGTTTGGAAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGTAGTCAGGTTAGCCATGGCAGGGAAATCAAACAAGAAGAAATGGGGTTTCAGAATTTCATGTCAAACGGGTTTATGCCTAGTCACATAAGCATTAACAATAATGGAGGTGGTGAATATATGAACCAGTGGGAAGAAAAGCCAAATGGGTGTTTTTTCCAAACACAAACCCCATTGGATTATGATATTGATGTTATTAAGCAACTAATTAGTAGTAGCAATGGAAGCAGTAATAATGGCTACTTCAGTATTGATGAAAACAAGATGGAGGAGAAGGGTATGTACAACTATTACTGA 984 0.4045 MGRAPCCDKANVKKGPWSPEEDSKLKDYIENHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPESHQRKPPYHQSSPQNPPPFPSHSLSSSIYGDYCSSYYSPAATTSFTGLEPISVPSSNYTNTSCTTTSISLPFNQNQESLVSVSPMQYYPITTVFGSEGSCSSSDGSCSQVSHGREIKQEEMGFQNFMSNGFMPSHISINNNGGGEYMNQWEEKPNGCFFQTQTPLDYDIDVIKQLISSSNGSSNNGYFSIDENKMEEKGMYNYY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1390g00007 327 CDD SANT 70 111 IPR001005 -
Gabi1390g00007 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gabi1390g00007 327 CDD SANT 16 62 IPR001005 -
Gabi1390g00007 327 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gabi1390g00007 327 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gabi1390g00007 327 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gabi1390g00007 327 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi1390g00007 327 Gene3D - 69 138 - -
Gabi1390g00007 327 FunFam Transcription factor MYB36 70 139 - -
Gabi1390g00007 327 MobiDBLite consensus disorder prediction 124 146 - -
Gabi1390g00007 327 SMART sant 13 64 IPR001005 -
Gabi1390g00007 327 SMART sant 67 115 IPR001005 -
Gabi1390g00007 327 FunFam Transcription factor RAX3 7 68 - -
Gabi1390g00007 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gabi1390g00007 327 PANTHER OS09G0431300 PROTEIN 1 273 - -
Gabi1390g00007 327 Gene3D - 7 68 - -
Gabi1390g00007 327 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1390g00007 Gabi-Chr1390 136625 138227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1390g00007 1 118 MYB Transcription Factor Family AT5G65790 90.678 1.16e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1390g00007 Myb_DNA-binding 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1390g00007 K09422 - gmx:100796382 483.026