Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1390g00006 ATGGAAGATGATCCAATTAATTATATTGACTTCAGTCATGATTGCGTGTCAAATGAAATGGAATACGTCGGAGTAGGAAATGAAATACCTGATGAAATGGAAGATGACATATCAAATGACTTGCCTAACAATATGTCAATTGCCATTCCATTATCACCGACAAAGAATGCTAAAGTTTCCATTGAGGTGGGAATGGAATTTCCCGAATGGAAGGATATAGTAAACTTATATACAGCATTTGGTAGGATAAGAGGATTCGGGATCCGGAGACGAACATCCAGGGAGGACTACGTGAAGCTAACATGCATTAGAGAAGGTCATCCACAAACTAAAAAGGAAGAAAATGTGGGTAAATTGTGTGAGGCCAAGTCAAGGAGAACATCATCGTCACGTATAGGATGTGAAGCTTGTGTCAAGGCTTCTAGGAATAAAAAAACAAATATGTGGAGAATTACACATTTCATCGACAACCATAATCATGAGATGGTTACTCCGAAAAGTGTTACATATCTGAGATCACACAGAAAAATGCCTGATGCTGCAAAATGTTTGGTAGAAAAATTCAACAACTCGAGTTTGCCAACTGGAAAGGTAGCCACCATATTCAAAAGCCATGATCTGGGGTTTGACAGTCGAGATTGTTATAATCATATGAAAAATGTGAGAAGAAAGATATATGATGCTGGGGATGCACAAGCTGTGCTACATTATTGTATTAAACAACAAGCATTAAATCTGGATTTTTTTTATTCCATCAAGTGTGATGATGATGATCGAATGGTAAGCTTTTTTTGGATTGATGCAAGATCCAGACATGCCTATAAGCTTTTTGGTGATGTGATAACGTTTGACACGACATACAGGACTAATAAGTATTACATGCCATTTGGACCCTTTGTTGGTGTAAATAATCATATGCAATCGCTCTTGCTCGGATGTGCTTTATTACAAGATGAAACTGAGGATACTTTTATATGGCTATTCGAGGAATGGCTACGAGCAATGAATGGGAAACATCCAGTTGCCATAATTACTGATCAGGACATGGCAATTAGCAATGCAGTTGCCAAAGTTTTCCCAAACACCAAGCATCGATTTTGTTTGTGGCACATCATGAAAAAATTTCCTGAGAAGCTATCCCATGTTTACCATGAGCATGCATCATTTAAGAAGAATTTGAACGAGTGTATATGGAGCTCCAAGAGTGCTGAAGAGTTTGAAGAAAGATGGCAACATCTTCTTATTCAGTATAGTCTTCATGGAAATGAATGGTTGCATGGACTCTACTCAATTAGATCGTCATGGGTACCAATCTTCAACAGATCCATTTTTTTTGCTGGCATGAACACTACTCAGCGCAGTGAGAGTATAAATTCATTCTTTGATGGTTTTGTTACATCTGGCACAACATTGAAGGAATTTGTGGAGAAATATAACCAAGCAGTAGATACTCGGTACGAGTCATCCAAAAAAGAAGACTTTGAATCTAAGCACAAAGAAAGGCTTTTGACATTTAATATGCCATTAGAGGAGCATGCAGCTAAAGTGTATACCCGTGCAATTTTTTTAAAGTTCGGTGAAGAGCTTTCTCTTAGTTTACGATTATCTAAGGAGAAACTTGGAAATGACATTGAGTGGGTTACCTACCATGTTTTTAATAAGAAGGACAACAAAGATTATGCAACAGTTGATATAAAATTGGAAAACAAAGAGGCTAGGTGTTCTTGCCTTTATTTTGAGTTCATGGGAATCTTATGTCGACATGTTCTTGCTATTTTTTTGATAGAAAATATCGAGCAGATCCCTGAACACTTCATCTTGCGCCGTTGGCGCAAGGAAGGAAATGACATACTAAGTATAGACAGCAACAGTTATACAACTGATGGAGATAGACTTCTTCGTAGCTTTCACCTACGCTCTAGATATTCCAGACTTGATGAGCTTGCATATGCATCGAGCGAAGCTTTTAGATTCATTTGTGATGGTATTGATTCTCTCTCTCTAGCTGCAGAAAAGTTTGTGACTTCTGAGGAGACTACTAGTCTTAGCGATTCTGACTTACAATACTTGGGTCATCATTCAGAAGAGTCTTCTATGAGGAACTTGAAGGATCCCTACATTTCTCAAACAAAAGGGCGAAAAAAGGACTCTCAATATACTTCACAGGGACGCAGGATTCGTAGCGGGATTGAAGAAGCATCAAAACATACTAATATATGTGGAATTTGTAAAAAACGAGGACACAATAAGCGCACATGCAAAGATATAAATCTATAA 2277 0.3781 MEDDPINYIDFSHDCVSNEMEYVGVGNEIPDEMEDDISNDLPNNMSIAIPLSPTKNAKVSIEVGMEFPEWKDIVNLYTAFGRIRGFGIRRRTSREDYVKLTCIREGHPQTKKEENVGKLCEAKSRRTSSSRIGCEACVKASRNKKTNMWRITHFIDNHNHEMVTPKSVTYLRSHRKMPDAAKCLVEKFNNSSLPTGKVATIFKSHDLGFDSRDCYNHMKNVRRKIYDAGDAQAVLHYCIKQQALNLDFFYSIKCDDDDRMVSFFWIDARSRHAYKLFGDVITFDTTYRTNKYYMPFGPFVGVNNHMQSLLLGCALLQDETEDTFIWLFEEWLRAMNGKHPVAIITDQDMAISNAVAKVFPNTKHRFCLWHIMKKFPEKLSHVYHEHASFKKNLNECIWSSKSAEEFEERWQHLLIQYSLHGNEWLHGLYSIRSSWVPIFNRSIFFAGMNTTQRSESINSFFDGFVTSGTTLKEFVEKYNQAVDTRYESSKKEDFESKHKERLLTFNMPLEEHAAKVYTRAIFLKFGEELSLSLRLSKEKLGNDIEWVTYHVFNKKDNKDYATVDIKLENKEARCSCLYFEFMGILCRHVLAIFLIENIEQIPEHFILRRWRKEGNDILSIDSNSYTTDGDRLLRSFHLRSRYSRLDELAYASSEAFRFICDGIDSLSLAAEKFVTSEETTSLSDSDLQYLGHHSEESSMRNLKDPYISQTKGRKKDSQYTSQGRRIRSGIEEASKHTNICGICKKRGHNKRTCKDINL 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1390g00006 758 MobiDBLite consensus disorder prediction 707 721 - -
Gabi1390g00006 758 MobiDBLite consensus disorder prediction 694 728 - -
Gabi1390g00006 758 Pfam FAR1 DNA-binding domain 76 163 IPR004330 -
Gabi1390g00006 758 SMART 26again6 572 599 IPR006564 GO:0008270
Gabi1390g00006 758 Pfam MULE transposase domain 280 374 IPR018289 -
Gabi1390g00006 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 659 IPR031052 GO:0006355
Gabi1390g00006 758 ProSiteProfiles Zinc finger SWIM-type profile. 561 597 IPR007527 GO:0008270
Gabi1390g00006 758 Pfam SWIM zinc finger 564 594 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1390g00006 Gabi-Chr1390 115952 118330 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1390g00006 MULE 1e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1390g00006 - - vvo:131633311 691.804