Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi138g00010 ATGCAACAATCGAACGGTTCTGATTCATCTCAACAACAACAGCAACAGTCGGAGCTGAACCAACAACGGCAACGACAACCGCAGGCTCAGCCGGTGGCGCTGCCGCAGCAGTGGGTGCCGATGCAGTACCCTGCGGCGGCGGCGGCGATGGTAATGCCGCACCACATGTTACCGCCTCAACATTACGCGCCGCCGCATTACGTGCCTTACCAGTACCAGCAGCTGCCACACGTGCTTCACCAGCCCCAGCATGGATCCAGCGGTGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGTTTCGCTTCTACCGGCGAGATTACCTCCATCAAACTTATTCGCAATAAGCAGACAGGTTTATCAGAGGGTTATGGATTCGTGGAATTCTATTCACATGCCACAGCTGAGAAAGTTCTACAGAATTATGCTGGAATTGTGATGCCCAATACAGAGCAACCTTTCCGTCTGAACTGGGCAACATTTAGCACAGGAGACAAGTGTTCAGACAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGTGTGTTGCATGAAACATTTGCTAGTGTATATCCTTCCGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAGGGCTATGGTTTCGTTAGGTTTGGAGATGATAATGAGAGATCCCAGGCTATGACTCAGATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACACCAAGGAAATCATCTAGCCATCAACAAGGAGGCCAGTCAAATGGCACAACCAGCCAATCTGAAGCAGATTCTACTTCTACGAACACAACTATATTTGTTGGAGGACTCGATCCTAATGTTACAGATGAAGATCTTAGGCAGCCGTTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGGTGTGGTTTTGTCCAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGTACAACGATTGGTAAGCAAACGGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAATGGATTTGGCCAACCCCTGGAGTGGGGCATATTATGGGGCCCCTATTTATGATTGTTATGGATACGCGTTGCCGCCACCTCATGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCCGTTTATGGAGGCCACCAACAGCAAGTAAGCTGA 1266 0.4771 MQQSNGSDSSQQQQQQSELNQQRQRQPQAQPVALPQQWVPMQYPAAAAAMVMPHHMLPPQHYAPPHYVPYQYQQLPHVLHQPQHGSSGENKTVWVGDLHHWMDENYLHRCFASTGEITSIKLIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGIVMPNTEQPFRLNWATFSTGDKCSDNVPDLSIFVGDLAADVTDSVLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSSHQQGGQSNGTTSQSEADSTSTNTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDLANPWSGAYYGAPIYDCYGYALPPPHDPSIYAAAYGAYPVYGGHQQQVS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi138g00010 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 81 367 - -
Gabi138g00010 421 CDD RRM2_SECp43_like 183 262 - -
Gabi138g00010 421 CDD RRM1_SECp43_like 92 172 - -
Gabi138g00010 421 SMART rrm1_1 185 259 IPR000504 GO:0003723
Gabi138g00010 421 SMART rrm1_1 92 167 IPR000504 GO:0003723
Gabi138g00010 421 SMART rrm1_1 292 359 IPR000504 GO:0003723
Gabi138g00010 421 MobiDBLite consensus disorder prediction 259 296 - -
Gabi138g00010 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 356 IPR000504 GO:0003723
Gabi138g00010 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Gabi138g00010 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Gabi138g00010 421 Gene3D - 90 170 IPR012677 -
Gabi138g00010 421 CDD RRM3_NGR1_NAM8_like 290 361 - -
Gabi138g00010 421 FunFam Polyadenylate-binding protein RBP47 274 393 - -
Gabi138g00010 421 Gene3D - 183 259 IPR012677 -
Gabi138g00010 421 SUPERFAMILY RNA-binding domain, RBD 52 172 IPR035979 GO:0003676
Gabi138g00010 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Gabi138g00010 421 SUPERFAMILY RNA-binding domain, RBD 183 364 IPR035979 GO:0003676
Gabi138g00010 421 FunFam Polyadenylate-binding protein RBP47C isoform A 183 259 - -
Gabi138g00010 421 MobiDBLite consensus disorder prediction 1 33 - -
Gabi138g00010 421 MobiDBLite consensus disorder prediction 263 296 - -
Gabi138g00010 421 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Gabi138g00010 421 Gene3D - 267 369 IPR012677 -
Gabi138g00010 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Gabi138g00010 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi138g00010 Gabi-Chr138 124518 132638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi138g00010 93 371 Eukaryotic Initiation Factors Gene Family AT4G34110 27.817 1.52e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi138g00010 - - gmx:100801446 709.523