Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi138g00009 ATGTTGTCTATCAAATTACTATTGTGCTCTCTGTTTTTGTTTATGTGCCACTTCGCCATATCATGCAACGCAAACAAACAGAGTGAATACCTCTATAAGTTTCTTCAGTCACGGAGGTCTCAAAAACCCTCACATGGAGAAGCTTCTGATGGAGCTGAACTCGTGGTACATGTAGTTGAGAACCAATATGGGCTTATGGAAGCTGACAAAGTGAAAGCTTTACCGGGACAACCCCAAGGTGTGGATTTCGATCAATATGCAGGCTATGTAACGGTGGATGCCAAGAAAGGGAGAGCACTGTTCTACTATTTTGTGGAGTCACCTCATAATTCTTCTACCAAGCCTCTTGTTCTATGGCTAAATGGAGGGCCTGGATGCTCTTCCCTGGGGTATGGAGCCATGGAAGAACTGGGACCTTTTAGAGTCAACAGTGATGGAAGAACACTTTACAGAAATGAATATGCATGGAACAAAGTGGCAAATGTCATTTTCCTAGAGTCTCCAGCAGGAGTTGGCTTTTCATATTCAAACAATTCTTCAGACTACTCTAAAATTGGTGACAATAGCACAGCCTTGGATTCTTACACTTTTCTTCTGAACTGGCTTGAGAGATTTCCACAGTATAAAACTCGTGACTTTTTCATAACTGGAGAAAGCTATGCTGGTCATTATGTTCCTCAACTAGCTGACACTATTCTCTCAAATAATAAGCTAAGTACAAATCACACTGTGATCAACCTGAAAGGAATTGCGATTGGGAACGGTTGGATAGATGATAGTATGTGCTCAAAGGGAATGTATGACTATTTCTGGACACATGCGCTTAACTCTGACGAAACCCATGAAGGAATTGAAAGACATTGTGACTTTGAGAGCGTTGACTTTACAAGTGAATGTTACAAATATCAGAGTACAGCGGATGATGAGGTTGGAAACCTTAATATATACAACCTATATGCTTCACCTTGTGATTTAGCTGCAACAAAAACTGGTGCTAGTCCAGCCACTTTCTCTGGAAACAACTTCGACCCTTGTTCTGACGATTATACCAATTCCTACTTAAATCTGGCTGAGGTTCAAGAGGCTCTTCATGCTAAAGCCTCGAAATGGGTTGCTTGCAGCGGAGTGGGTTGGACAGATAGCCCTGCAACTATTCTACCCACCATAAATCGGTTAATATCAAGTGGCATAAGCACCTGGATATATAGTGGCGATACAGATGGACGTGTTCCCATAACATCATCTAGGTATTCAGTAAATGCAATGAAACTTCCAGTGGAGACAGAATGGCGTCCATGGTACTCTGGCAATGAGGTTGGAGGATACGTGGTTGGGTACAAAGGGCTCACACTCGTCACTGTAAGAGGAGCAGGGCACACGGTTCCAAGCTACCAACCACAGCGAGCACTAACCATGATTTCATTTTTCCTTCGTGGAGAACTTCCTCCTAAATTAACCTCCTAA 1464 0.4269 MLSIKLLLCSLFLFMCHFAISCNANKQSEYLYKFLQSRRSQKPSHGEASDGAELVVHVVENQYGLMEADKVKALPGQPQGVDFDQYAGYVTVDAKKGRALFYYFVESPHNSSTKPLVLWLNGGPGCSSLGYGAMEELGPFRVNSDGRTLYRNEYAWNKVANVIFLESPAGVGFSYSNNSSDYSKIGDNSTALDSYTFLLNWLERFPQYKTRDFFITGESYAGHYVPQLADTILSNNKLSTNHTVINLKGIAIGNGWIDDSMCSKGMYDYFWTHALNSDETHEGIERHCDFESVDFTSECYKYQSTADDEVGNLNIYNLYASPCDLAATKTGASPATFSGNNFDPCSDDYTNSYLNLAEVQEALHAKASKWVACSGVGWTDSPATILPTINRLISSGISTWIYSGDTDGRVPITSSRYSVNAMKLPVETEWRPWYSGNEVGGYVVGYKGLTLVTVRGAGHTVPSYQPQRALTMISFFLRGELPPKLTS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi138g00009 487 ProSitePatterns Serine carboxypeptidases, serine active site. 215 222 IPR018202 GO:0004185
Gabi138g00009 487 FunFam Carboxypeptidase 385 479 - -
Gabi138g00009 487 Gene3D - 345 376 - -
Gabi138g00009 487 Pfam Serine carboxypeptidase 75 478 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 SUPERFAMILY alpha/beta-Hydrolases 69 480 IPR029058 -
Gabi138g00009 487 Gene3D - 385 479 - -
Gabi138g00009 487 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Gabi138g00009 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 69 466 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 ProSitePatterns Serine carboxypeptidases, histidine active site. 449 466 IPR033124 GO:0004185
Gabi138g00009 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 175 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 201 226 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 164 IPR001563 GO:0004185|GO:0006508
Gabi138g00009 487 FunFam Carboxypeptidase 65 325 - -
Gabi138g00009 487 Gene3D alpha/beta hydrolase 65 325 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi138g00009 Gabi-Chr138 119755 123985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi138g00009 353 480 Calmodulin-binding Proteins AT2G22960 29.323 8.75e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi138g00009 K16297 - gmx:100820473 825.469