Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi138g00006 ATGGAAGCAATGAACAGAGGCTACTCCTCTACTTCTTGTTCCGATTCCTCCACTTCAGAGTCCACCCCACGAAACAAACCGGGCAGAATCAAAGGACCATGGAGTGCTGAAGAAGATCGGGTCCTGACCCGACTCGTGGAAAAATACGGGCCCCGAAACTGGTCCTTGATAAGCCATTACATAAAGGGTAGGTCCGGCAAGTCCTGCAGGCTTCGGTGGTGTAACCAGCTTAGCCCCACGGTGGAGCACCGACCATTCTCGCAGCAAGAGGATGACATCATCTTAGCCGCACATGCCCAATACGGTAACAGGTGGGCCATCATTGCCCGGTTATTACCGGGTCGAACCGATAATGCTATCAAGAATCATTGGAACTCATCCCTTAAACGGCGTCGTTCTGTTGTTGCTGCTTCTGCTGCTGCGGAAGACGTCGTCGGGGATGCTTCTCCGGGATCTGTGCCATTGGAGGATGACCCGTTGACCGAGTTGACACTGGCGACTCCGGGGACCGGTAACGGTGTCGGGGAGGAGATGGTGGCGGAGCAGCGAAGAGTTTCGCCGGAGGGTGTGCCGGCGGGGTTTTGGGATGCTATGCGAGATGTGATTGCGAGGGAAGTGAGAGAATATGTGTCTCACACGTTTTCTGACAACTTGGGTTTTAATTGA 666 0.5405 MEAMNRGYSSTSCSDSSTSESTPRNKPGRIKGPWSAEEDRVLTRLVEKYGPRNWSLISHYIKGRSGKSCRLRWCNQLSPTVEHRPFSQQEDDIILAAHAQYGNRWAIIARLLPGRTDNAIKNHWNSSLKRRRSVVAASAAAEDVVGDASPGSVPLEDDPLTELTLATPGTGNGVGEEMVAEQRRVSPEGVPAGFWDAMRDVIAREVREYVSHTFSDNLGFN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi138g00006 221 SMART sant 30 79 IPR001005 -
Gabi138g00006 221 SMART sant 82 130 IPR001005 -
Gabi138g00006 221 PANTHER MYB PROTEIN-RELATED 31 147 - -
Gabi138g00006 221 MobiDBLite consensus disorder prediction 1 34 - -
Gabi138g00006 221 Gene3D - 85 131 - -
Gabi138g00006 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 132 IPR017930 -
Gabi138g00006 221 FunFam MYB transcription factor 31 82 - -
Gabi138g00006 221 ProSiteProfiles Myb-like domain profile. 26 77 IPR001005 -
Gabi138g00006 221 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Gabi138g00006 221 CDD SANT 33 75 IPR001005 -
Gabi138g00006 221 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Gabi138g00006 221 Gene3D - 30 82 - -
Gabi138g00006 221 Pfam Myb-like DNA-binding domain 34 91 - -
Gabi138g00006 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 81 IPR017930 -
Gabi138g00006 221 MobiDBLite consensus disorder prediction 1 25 - -
Gabi138g00006 221 CDD SANT 85 128 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi138g00006 Gabi-Chr138 69502 70167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi138g00006 29 174 MYB Transcription Factor Family AT4G37260 60.959 9.27e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi138g00006 Myb_DNA-bind_6 5.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi138g00006 - - zju:107420865 289.656