Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi138g00005 ATGCTTTCTCGCAAACCAGTTTCTTCTTCTTTTCCTTTACCACCTACGCCTCCTCCTACGCCTCCCAAACTTGGAACCAAGCAAAACGACGGCGATGACAAAACCGATAATTTTGTTGAGGTGTGGCGGCTCACTGGGCAAAGGAAGCTCCGGCACCTTCCTCCTTCTCCCTTAGACAATCCAGGTTTTTCTCTTCGAAGGAAGACAGTGGATCATGATGGAATGATAAATACAAAACATTCATACAATTTGGATAGATCCTCTTTAGATCCTTCTGTTGCTAAAGCAAAATATAATATGAGAGTGCATATTCCAGCCGCAAAAATCTTGATAGGCAATAGTTCATGTAAAACCCTCAGACCCAAAAAAGTCTCTCATGATGATGACTGTGAAAGTATTTCCAACTTGAGCTTGCATGTTGCTGCCAGTGCCAAGAGTGCGACCACAAGTGCAGTTACCAGTCCTTTTACTAGTCCACATAGATCAAGCAATGCAGATTTCTTTGATCCTATCATCAATTTTCCTCTAGAAGTTAATGACAATATGAAAATGTTACCAGCTAAAATCGTTCGTAGTCCAGACCATTCTCCTATTCATTGCCCAATGAGCCTCAGTTGTTACCTCAATCCTAAAATTAAAGAGGGATCTCGGCACCATAAATTTTTGTCTAGGGTGTGGCCTGAAAATAACCATGTTGATGCTCATCCGTTACCCTCTCCTCCTAGAGCTTCAGCATCAGCACAATTATCTATCATGCATCAATCAAGTACCATGCATCACACTACAGAAAATCTGCCTTCAACAAAAGGTCAATGGCAGAAAGGAAAACTTATAGGACGCGGCGCCTTTGGAAGTGTATATCATGCTACCAACCTAGAGACTGGAGCCTCATGTGCAATGAAGGAGGTGGATCTAATTCCTGATGATCCTAAGTCTGCTGAGTGCATAAAGCAACTAGAGCAGGAAATCAGAATTCTGCGTCAACTACACCACCCCAATATTGTGCAGTATTATGGAAGTGAACTAGTTGGAGATCATATTTATATATATATGGAGTATGTCCATCCTGGATCAATTAATAAATTTATGCGTGAACATTATGGAGCTTTGACAGAATCTGTGATTCGCAATTTTACAAGGCATATTCTCTCTGGATTGGCTTACTTGCATAGTACCAAGACTATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTTAACGAATCAGGCATTGTCAAGCTTGCAGATTTTGGGGTGGCAAAAATTCTGACAGGGAATTCATATGACCTTTCTTTGAAGGGTAGTCCGTACTGGATGGCTCCAGAGGTCATGAAAGCTGCCGTAAAGAATGAATCCAATCCTGACATTGTCACGGCCGTTGATATATGGAGCTTAGGGTGCACCATCATTGAAATGTTGACAGGCAAACCTCCTTGGAGTGAATTTGAAGGGCCTTCAGCAATGTTCAAGGTACTGCACCAGTCCCCGCCTCTACCTGAAATTTTATCTTCAGTGGGAAAGGATTTCCTCCAACAATGTTTACAAAGGGACCCTGCAGATCGACCATCTGCAGCAATGCTTCTTAAGCATCCCTTTGTACAGAATTTGCATGATCAACATGTTCTAGTTCAACCACACTTGTATCCTAGAGGAAGCATAGGACAAGGAGACAATTCACCTAGTCCCGGAGACATTACCAAAAATAGACATGACATAATGCCAGCCTCCATAAGCGCACGGATTTTTAACAAAATTCAGAAATTAATGGGTGATACTTCCCAATAA 1785 0.4202 MLSRKPVSSSFPLPPTPPPTPPKLGTKQNDGDDKTDNFVEVWRLTGQRKLRHLPPSPLDNPGFSLRRKTVDHDGMINTKHSYNLDRSSLDPSVAKAKYNMRVHIPAAKILIGNSSCKTLRPKKVSHDDDCESISNLSLHVAASAKSATTSAVTSPFTSPHRSSNADFFDPIINFPLEVNDNMKMLPAKIVRSPDHSPIHCPMSLSCYLNPKIKEGSRHHKFLSRVWPENNHVDAHPLPSPPRASASAQLSIMHQSSTMHHTTENLPSTKGQWQKGKLIGRGAFGSVYHATNLETGASCAMKEVDLIPDDPKSAECIKQLEQEIRILRQLHHPNIVQYYGSELVGDHIYIYMEYVHPGSINKFMREHYGALTESVIRNFTRHILSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGVAKILTGNSYDLSLKGSPYWMAPEVMKAAVKNESNPDIVTAVDIWSLGCTIIEMLTGKPPWSEFEGPSAMFKVLHQSPPLPEILSSVGKDFLQQCLQRDPADRPSAAMLLKHPFVQNLHDQHVLVQPHLYPRGSIGQGDNSPSPGDITKNRHDIMPASISARIFNKIQKLMGDTSQ 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi138g00005 594 ProSiteProfiles Protein kinase domain profile. 272 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi138g00005 594 FunFam Mitogen-activated protein kinase kinase kinase 5 269 570 - -
Gabi138g00005 594 ProSitePatterns Protein kinases ATP-binding region signature. 278 301 IPR017441 GO:0005524
Gabi138g00005 594 SUPERFAMILY Protein kinase-like (PK-like) 249 562 IPR011009 -
Gabi138g00005 594 Gene3D Transferase(Phosphotransferase) domain 1 268 549 - -
Gabi138g00005 594 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 123 542 - -
Gabi138g00005 594 MobiDBLite consensus disorder prediction 548 569 - -
Gabi138g00005 594 Pfam Protein kinase domain 273 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi138g00005 594 MobiDBLite consensus disorder prediction 10 24 - -
Gabi138g00005 594 SMART serkin_6 272 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi138g00005 594 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi138g00005 Gabi-Chr138 49358 55054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi138g00005 232 535 MAP Kinase Kinase Kinase AT5G66850 67.434 3.24e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi138g00005 Pkinase 1.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi138g00005 - - gmx:100819530 790.415