Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi138g00002 ATGGCCCTGTTGGACTTCTCCGGCGAGATCGCCGCCGATATATGGAAGACTCTGGTAACCATTTGCCGTAAGACTATTCAGTGCAGAGCAAGCGCAGAGCAACTCATAACCTATGTCCGCGAACTCCTCCCCACCATAGAAGAAATCAAATACTCCGGCGTTGAACTTCCGGCGCCGCGGCAGTCGCAGCTTGATCGCATCTCGGAGGTCCTTCGCTCCGGCGTGGAGCTTTCCCACAAGGCACTCTCCTCAAGCCGGTGGAACGTGTACAGGAACTTCCAGCTTGCGAAGAAGATGGAGAAACTTGAGAAAACGGTTTCAAAGTTCTTGCAGGTTCCCATGCAGGCTCATATATTGGCTGACGTGCACCACACCCGGTTCGAGATGGCCGAGCGGTTCGACCGGGTTGATGCCTCGAACCGGAGGATGGAGCAGTACTTAGGTGCCATGAAGATTGGGGTTGGTGGTGGAGGGTGGGTTGAGGAGGCTGTGAGGAGTATGGAGGATGATGAGACTTGGGTTGAGGGTAGTTCTGGTAATTTCAGTGTAGGTTTGGATTTTGGGAAGAATAAGGTTTTGGATATGATTGTTGCAAGAGATGATGTTTGGATTGTTGGGATTTGTGGGATTGGTGGATCTGGTAAGACTACTCTTGCAAGAGAGGTTTGCAGAGATGATCAAGTCCGAAGTTATTTCAAGGAGAGAATCTTGTTCTTGACTGTCTCACAATCCCCAAATGTGGAGCATCTCAGGACAAAGATTTGGGGTTATATTATGGGCAACGGAAGCTTGAATGCAAATTGTGCGGTTCCGCAATGGATGCCACAATTTGATTGCAGAAGCCAAAGTCAAATCCTGATTGTTCTTGATGATGTATGGTCACTCTCTGTGCTTGAGCAGCTTGTCTTTAGAATACCTGGTTGCAAATTCGTTGTGGTATCCAGATTTAAATTCCCAACAATTTTTAATGCCACTTATGAAGTGGAATTGCTGAGTGAAGAGGATGCCTTGTCCTTGTTCTGTCACCATGCTTTTGGACAGAAATCAATCCCTTTAGCTGCTAATCAGAATTTGGTCAATCAGGTTGTGGCTGAGTGTGGAAGGCTTCCACTGGCTCTAAAAGTTATTGGAGCTTCTTTGCGAGACCAGACTGAAATGTTTTGGTTAAGTGTTAAAAACAGGCTATCTCAAGGCCAAAGTATTGGGGAATCCTATGAAATCAATCTGATTGATAGAATGGCAATCAGTACTAATTACCTTCCAGAAAAGATCAAGGAGTGCTTCTTGGACCTGTGTTCGTTTCCTGAGGATAAAAAGATTCCTCTAGAAGTTCTAATCAATATGTGGGTTGAAATCCATGATATTCATGAAACAGAAGCATTTGCTATTGTGGTTGAGCTTTCCAACAAGAACCTTCTCACCTTAGTGAAAGAGGCACGTGCTGGGGGTATGTATAGCAGTTGCTTTGAGATTTGTGTTACTCAACATGACATACTAAGAGATCTTGCTCTTAATTTGAGCAATCGTGGGAGCATTAATGAACGCCGAAGGTTAGTTATGCCAAAAAGAGAAGAAAATGGACAACTCCCTAAAGAGTGGTTGAGATACATGGACAAACCGTTTGAAGCTCAGATTGTTTCAATTCACACAGGTGAAATGACAGAAATGGACTGGTGTAAACTGGATTTTCCTAAGGCTGAAGTGCTGATCATTAATTTCACATCCAGTGAATACTTCTTGCCACCCTTCATTGATAGAATGCCAAATTTGAGGGCATTAATAGTTATAAACCACAGTGCTTCATACGCTTGCCTTCACAATGTTTCAGTTTTTAAGAATTTGTCCAACTTGAGAAGCCTCTGGCTTGAAAAAGTTTCCACCCCACACTTATCAGGCATTGTCTTGAAAAACTTGAGCAAATTATTTATAGTCCTCTGCAAGGTTAATAACAGTCTGGTGGGAAAAGAGGCAGACCTAGCCCAAAATTTCCCTAACCTCTCTGAGCTCACTCTTGATCACTGTGATGATGTAACTGAGTTGCCTTCAAGCATTTGTGGAATTCAGTCACTCAAGAACTTGAGTCTCACCAACTGCCACAATTTGACCCAACTACCTATTGAATTTGGAAAACTAAGATCTCTAGTGATCCTCCGTTTATATGCTTGTCCAGATTTGGAAACACTTCCTCCTAGTATCTGTGACATGATTAGATTGGAGTATATTGACATTTCTCAATGTGTTAGCCTTGCATGCTTCCCTGAAGAGTTTGGTAATTTAGTAAGCTTGGCAAAGATAGACATGAGGGAATGCCCCGTGATTAGGAATTTACCAAAGTCTGCAGTGTCATTGCAGTCTCTGCAGCTTGTAATTTGTGATGAGGAGGTGTCTGGGATGTGGAAACATGTTGAGAAGGCCAAGCCAAATGTTCATATTCAAGTACCTGAACAGTACTTTGATCTGGACTGGCTTAAAGATTGA 2478 0.4354 MALLDFSGEIAADIWKTLVTICRKTIQCRASAEQLITYVRELLPTIEEIKYSGVELPAPRQSQLDRISEVLRSGVELSHKALSSSRWNVYRNFQLAKKMEKLEKTVSKFLQVPMQAHILADVHHTRFEMAERFDRVDASNRRMEQYLGAMKIGVGGGGWVEEAVRSMEDDETWVEGSSGNFSVGLDFGKNKVLDMIVARDDVWIVGICGIGGSGKTTLAREVCRDDQVRSYFKERILFLTVSQSPNVEHLRTKIWGYIMGNGSLNANCAVPQWMPQFDCRSQSQILIVLDDVWSLSVLEQLVFRIPGCKFVVVSRFKFPTIFNATYEVELLSEEDALSLFCHHAFGQKSIPLAANQNLVNQVVAECGRLPLALKVIGASLRDQTEMFWLSVKNRLSQGQSIGESYEINLIDRMAISTNYLPEKIKECFLDLCSFPEDKKIPLEVLINMWVEIHDIHETEAFAIVVELSNKNLLTLVKEARAGGMYSSCFEICVTQHDILRDLALNLSNRGSINERRRLVMPKREENGQLPKEWLRYMDKPFEAQIVSIHTGEMTEMDWCKLDFPKAEVLIINFTSSEYFLPPFIDRMPNLRALIVINHSASYACLHNVSVFKNLSNLRSLWLEKVSTPHLSGIVLKNLSKLFIVLCKVNNSLVGKEADLAQNFPNLSELTLDHCDDVTELPSSICGIQSLKNLSLTNCHNLTQLPIEFGKLRSLVILRLYACPDLETLPPSICDMIRLEYIDISQCVSLACFPEEFGNLVSLAKIDMRECPVIRNLPKSAVSLQSLQLVICDEEVSGMWKHVEKAKPNVHIQVPEQYFDLDWLKD 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi138g00002 825 Pfam NB-ARC domain 190 412 IPR002182 GO:0043531
Gabi138g00002 825 PRINTS Disease resistance protein signature 366 380 - -
Gabi138g00002 825 PRINTS Disease resistance protein signature 204 219 - -
Gabi138g00002 825 PRINTS Disease resistance protein signature 279 293 - -
Gabi138g00002 825 PRINTS Disease resistance protein signature 685 701 - -
Gabi138g00002 825 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 8 823 IPR039203 GO:0050832
Gabi138g00002 825 ProSiteProfiles RPW8 domain profile. 1 148 IPR008808 -
Gabi138g00002 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 431 IPR027417 -
Gabi138g00002 825 Gene3D - 330 409 IPR042197 -
Gabi138g00002 825 Gene3D - 179 320 IPR027417 -
Gabi138g00002 825 SUPERFAMILY L domain-like 567 788 - -
Gabi138g00002 825 Gene3D - 411 502 IPR036388 -
Gabi138g00002 825 Gene3D Ribonuclease Inhibitor 543 809 IPR032675 -
Gabi138g00002 825 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 12 132 IPR008808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi138g00002 Gabi-Chr138 29459 32552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi138g00002 201 793 WRKY Transcription Factor Family AT5G45050 23.700 3.97e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi138g00002 - - aprc:113874975 1395.56