Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1388g00005 ATGCGCGGAAGGACGTATAATCCTGCAAATTCAAACTGGGTGAGTCATCTATCTATTCATTACAAAATGCACCATTTTCTGATTTCTAGATTAACTTCTAGGACCCCCAACTTAGGTGTTGTTTTCTTCACTTGTCGTTCTTTATCTGTATCCAACACAAATCACCACCAAGGTGGCTCCTTTACGGTATCAGCCCTCATCAATTCATGTGGGTTATCACCTGAAATGGCCCTCAAACTCTCCAAAAAGTTGCAATTGAAAAACCCAGATGGGCCAAATGCTGTACTTGATCTTCTCAGGAACTATGGGTTCTCTCAGACCCAATTATCTAGCCTTGTCAAGAAACACCCTTTAGTGCTTTTTGCAAAACCTGAGAAAACCCTTTTGCCAAAACTCAAGTTCTTCCATTCTATTGGGGTTTCAACCTCTGACCTCCCTAGAATATTCATTATAAACCCTTCATTTCTAACAAAAAGCTTGAAGAACAACATTATCCCACGTTATGAGATCATCAGGAGTCTAGTTCGCAGTGATAAGGAAGTAGTTTCAGCTTTGAAGAATGGGGCATGGTACTTTCACTGTTGTAAGGGAATAAGTAATTCAGTTCCAAACATAGAGGCTTTGAGACAGCTTGGCCTGCCTCAAGATTCCATTTCTCTCTTGGTAACCAATTTCGCTAATATAGCATTTATGAATCATTCGAGATTTGTTGAGGCTGTTGAGACAGTGAAGGAAATGGGGTTTGATCCTTTGGAATCAAGATTTATTGTGGCACTTCAAGTACTTGCAAAGATAAATAAAGCAATGTGGAAATTTAAATTAGAGGTTTTTGAGAGGTGGGGCTGGTCTAGAGATATCTGTCTTTTAGCTTTCAAAAAGCATCCAAAGTGTATGCTGTTGTCAGAAAAGAAGATTATTAAAGTACTGAATTTTTTGGTGAAGGATATGGGTTGGCCCTCAGAAGACATTGCTAGATGCCCTTGGATTCTTGACGGAAGCTTGGGGAAGACAATTATCCCTAGATGTACAGTAGTTGAAATTTTGAAGTCAAGGGGTTTGATAAAGAGAGATTTGCACTTGAGTAGCTTTTTGTCGATTGATGAGAAAAGGTTTTTGAAGAGATATGTGACCCAATTTCAGAAAAATGTGCCACATCTGTTGGATGCATACGAAGGAAAATGTCTGGAAAGAAATATGAAAGGAGAAAGCACCAAGGGTCACAACCTCATGCTGATGATGATGTCAGAATAG 1251 0.3933 MRGRTYNPANSNWVSHLSIHYKMHHFLISRLTSRTPNLGVVFFTCRSLSVSNTNHHQGGSFTVSALINSCGLSPEMALKLSKKLQLKNPDGPNAVLDLLRNYGFSQTQLSSLVKKHPLVLFAKPEKTLLPKLKFFHSIGVSTSDLPRIFIINPSFLTKSLKNNIIPRYEIIRSLVRSDKEVVSALKNGAWYFHCCKGISNSVPNIEALRQLGLPQDSISLLVTNFANIAFMNHSRFVEAVETVKEMGFDPLESRFIVALQVLAKINKAMWKFKLEVFERWGWSRDICLLAFKKHPKCMLLSEKKIIKVLNFLVKDMGWPSEDIARCPWILDGSLGKTIIPRCTVVEILKSRGLIKRDLHLSSFLSIDEKRFLKRYVTQFQKNVPHLLDAYEGKCLERNMKGESTKGHNLMLMMMSE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1388g00005 416 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 SMART mt_12 146 177 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 PANTHER CGI-12 PROTEIN-RELATED 58 377 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 Gene3D Transcription termination factor 3, mitochondrial 163 383 IPR038538 -
Gabi1388g00005 416 FunFam Mitochondrial transcription termination factor-like 160 383 - -
Gabi1388g00005 416 Pfam mTERF 96 305 IPR003690 GO:0003690|GO:0006355
Gabi1388g00005 416 Pfam mTERF 270 372 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1388g00005 Gabi-Chr1388 114463 116975 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi1388g00005 mTERF 6.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1388g00005 K15031 - gmx:106799612 479.559