Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1388g00003 ATGCACCATTTTCTGATTTCTCGATTAGCTTCTAGAACCCCCAACTTGGGTGTTTTTTTCTTCACTTTTCGTTCTTTATCAGTATCCAACACAAATCACCACCAAGGTGGCTCCTTTACAGTATCAACCCTCATCAACTCATGTGGGTTGTCCCCTGAAATGGTCCTCAAACTCTGCAAAAAGTTGCAATTGAAAAACCCAGATGACCCAAATGCTGTTGTTGATATTCTCAGGAACTATGGGTTCTCTCAGACCCAATTATGTAGCCTTGTCAAGAAAAAACCTTCACTGCTTTTTGCAAAACCTGACAAGACCCTTTTGCCAAAACTCAAGTTCTTCAGTTCTATTGGGTTTTCAACCACTGACATCCCTAGAATCCTCGCTGGGAACCCTACAATTTTACACACAAGCTTGAAGAACAACATTATCCCTCGTTATAAGATCATCAGGAGTCTAGTTCGCAGTGATAAGGAAGTAGTTTCAACTTTGAAAAATGGGCCACGGTACTTTTGCTGTTATAGGGTAATGAGTGATTCAGTTCCAAACATAGAGGTTTTGAGACAGCTTGGCCTGCCTCAAGGTTCCATTTCACTCCTCGTAACCAATTTTCCTCGTGTAGTATTCATGAAGCATTCGAGATTTGTTAAGGCTGTCGAGACAGTGAAGGAAATGGGGTTTGATCCTTTGAAATCAAATTTTGTTTTGGCTCTTCAAGTACTTGCAAAGATGGATAAAGCAATGTGGAAATTGAAGTTAGAGGTTTATGAGAGGTGGGGCTTGTCTAAAGATATCTGTCTTATAGCTTTCAAAAAGTATCCCCAGTATATGATGATGTCAGAAAACAAGATTATGAAAATAATGGGCTTCTTGGTGAAGGATATGGGTTTTCCCTCAGAAGAAATTGTGCGAAGTCCTGGGATTCTTAACCGCAACTTGGAGAATACATTGATCCCTAGATGTGCAGTTGTTAAAATTTTGAAGTCAAGGGGTTTGATAAAGAGAGATTTGCGCATAGGTAGCTTTATATCAATTACTGAGAAAACTTTTTTCGAGAGATATGTGACCCGATTTCAGAAAAAAGTGCCACAACTGTTGGATGCATACAAAGCCAATAATCTGAGAAGATTTGTTTTAGTGGTTTACCTTCATATCGGTTGGTCAAAAAAGATACTAGAAATGTTGTTTGCCATCAATTAG 1197 0.391 MHHFLISRLASRTPNLGVFFFTFRSLSVSNTNHHQGGSFTVSTLINSCGLSPEMVLKLCKKLQLKNPDDPNAVVDILRNYGFSQTQLCSLVKKKPSLLFAKPDKTLLPKLKFFSSIGFSTTDIPRILAGNPTILHTSLKNNIIPRYKIIRSLVRSDKEVVSTLKNGPRYFCCYRVMSDSVPNIEVLRQLGLPQGSISLLVTNFPRVVFMKHSRFVKAVETVKEMGFDPLKSNFVLALQVLAKMDKAMWKLKLEVYERWGLSKDICLIAFKKYPQYMMMSENKIMKIMGFLVKDMGFPSEEIVRSPGILNRNLENTLIPRCAVVKILKSRGLIKRDLRIGSFISITEKTFFERYVTRFQKKVPQLLDAYKANNLRRFVLVVYLHIGWSKKILEMLFAIN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1388g00003 398 FunFam Mitochondrial transcription termination factor-like 138 361 - -
Gabi1388g00003 398 Gene3D Transcription termination factor 3, mitochondrial 139 361 IPR038538 -
Gabi1388g00003 398 PANTHER CGI-12 PROTEIN-RELATED 37 356 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 SMART mt_12 197 227 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 Pfam mTERF 245 349 IPR003690 GO:0003690|GO:0006355
Gabi1388g00003 398 Pfam mTERF 75 289 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1388g00003 Gabi-Chr1388 60885 63703 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi1388g00003 mTERF 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1388g00003 K15031 - gmx:106799612 481.87