Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1388g00002 ATGATACCTAATTTTCTCATTTCCATATTAACTGCTTCATCATTCACGTACTGCAAGACTACCCAAACTCATTTGGGTTCTCTGCGTCAACACAATGCTCTCCTTTCTTTCTTCAATTCATTCACTTCACGCGCCTCTTCTGATTCTGAATCAGATAGAAACCACCACAAAGGTGACACCTTTACCATATCTTACCTCGTGAACTCATGTGGGTTGTCCTCAGAATTGGCTAAGGAGCTCTCCAAAAGAGTGAATTTGAAAAACCCAGATGGCCCAAATGATGTTCTTGATCTTCTCAAGAACTATGGGTTCTCTAAAGCCCAGATTGCAAAACTTGTGGAGAAACATCCATCGGTGCTTGTTGCAAAAGTAGAGACTACCCTTTTGCCTAAACTCAAATTCTTCCGTTCGATTGGGGTTTCCACTAGTGACATGCCAAAGATCCTAATTGGTAACCATTCACTCTTGGCGAGGAGCTTGGAGAAATGCCTTATCCCACGTTATGAGATCCTCAGAAGTGTAATTCGTAATGATCAGAAACTTGTTAGAGTTTTCGCAAATGCCCCAGTTAGATTTACATATGGTGACATATTGAATAATTTGGTTCCAAACATTAAGGTTTTGAGAAAATGTAGTGTGCCACAAACTTCCATCTCTCTCCTTATGGACCATTTTCTGAGTGCAGCATCTGCAAAGCATTCCAAATTTGTGGAAGCTGTCAAGTCAGTTAAGGAAATTGGGTTTAATCCTTTGCAAACAACTTTTGTCATTGCTGTCTATGTACTTGTAAGTATGAGTAAAGCAGCGTGGGAATCTAGATTTGAGGTTTATGAGAGGTGGGGTTGGAACCGAGAAATGGCTCTTGCAGCATTTAGAAAATTTCCCAATTTTATGAAATTGTCAGAGGAGACACTTGCCAAAAAAATGAGTTTCCTAGTGAAGGATATGGGTTGGCCATCTGAAGATATTGCTAAAGATCCTGTCATTCTAGGCTACAGCTTGGAGAAGAGGATTATTCCTAGACTCTCAGTGATTAAAATCTTGAAATCAAAATGTTTGCTTGAGAATGATTTGCACTTAAGCTCCTTTATACGCCCAACTGAGGAAGATTTTTTGAATAAATTTGTCATCAATTTTCAGGAAGATGTGCCTCTCTTACTAGATGTCTACAAAGGTTTGATTGATTATCGGAATGTAATATAG 1203 0.3915 MIPNFLISILTASSFTYCKTTQTHLGSLRQHNALLSFFNSFTSRASSDSESDRNHHKGDTFTISYLVNSCGLSSELAKELSKRVNLKNPDGPNDVLDLLKNYGFSKAQIAKLVEKHPSVLVAKVETTLLPKLKFFRSIGVSTSDMPKILIGNHSLLARSLEKCLIPRYEILRSVIRNDQKLVRVFANAPVRFTYGDILNNLVPNIKVLRKCSVPQTSISLLMDHFLSAASAKHSKFVEAVKSVKEIGFNPLQTTFVIAVYVLVSMSKAAWESRFEVYERWGWNREMALAAFRKFPNFMKLSEETLAKKMSFLVKDMGWPSEDIAKDPVILGYSLEKRIIPRLSVIKILKSKCLLENDLHLSSFIRPTEEDFLNKFVINFQEDVPLLLDVYKGLIDYRNVI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1388g00002 400 FunFam Mitochondrial transcription termination factor-like 160 383 - -
Gabi1388g00002 400 PANTHER CGI-12 PROTEIN-RELATED 60 377 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 SMART mt_12 320 355 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 SMART mt_12 182 214 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 SMART mt_12 146 178 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 Pfam mTERF 96 249 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 Pfam mTERF 262 372 IPR003690 GO:0003690|GO:0006355
Gabi1388g00002 400 Gene3D Transcription termination factor 3, mitochondrial 197 382 IPR038538 -
Gabi1388g00002 400 Gene3D Transcription termination factor 3, mitochondrial 67 196 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1388g00002 Gabi-Chr1388 46419 48037 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi1388g00002 mTERF 6.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1388g00002 K15031 - gmx:100786641 527.324