Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi137g00015 ATGGGAAAAATAATGGTGGGAAGTGCAAGTAAGGTTACTTTTATCTTCTTGGTTACTCTCGCCATTACCATTCCATGCCTTGAAGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGTACAAGCTGAGAAAGCCCATAGACTTGCTCTTGCGTCCTACGTGCCAATTCCTGAAGAGGTTACAGAGGACCTCAATCTACACGTTCATTTGGCATTGGATGAGACATCAAACAATACAAGGAGGGAGTTAAAGCAGAAATATCAAGGACCATGCACAGCCACCAACCCCATTGATACTTGCTGGAGGTGCAATCAAAACTGGGCCAAAAATCGGTTTAAGTTAGCCAAATGTGGTAAGGGGTTCGGAAGAAGGGCCACCGGAGGACTCGGTGGCCCCATCTATGTCGTCACCGACGAATCGGATAACGACATGATAAGCCCCAAACCTGGGACTCTCCGTTTTGGTGTTACCCAGAAGGGTCCATTGTGGATCATATTCCAACGTAGCATGATTATAAGGTTAAACCAAGAGTTGTTGGTTTCCTCCGACAAGACCATTGATGGTCGTGGAGTTAATGTTCAGATTAGGGATGGTGCTGGCATCACCATGCAGTTTGTGAACAATGTTATCATTCATGGGCTTCGCATTAAGAATGTCGTATCTAAGCCAGGGGGCATGATGAGGGACTCTTATAATCATGTTGGATTAAGAACCAGGAGTGATGGTGATGCCATCTCCATTTATGGTTCCACAAACATTTGGGTTGATCATGTTTCCATGTCTAATTGCGAGGATGGTCTTGTTGATGTTATACAAGGTTCCACTGCCATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTTGGAGCTAGTGATAGCTACAGTGGAGATAAGATTATGCAGGTGACAGTGGCATTCAACCACTTTGGGCAGGGATTGATTCAGAGGATGCCAAGATGCAGATGGGGTTTTGTCCATGTTGTGAACAATGACTACACTCACTGGCAAATGTATGCAATTGGTGGTAGCTCAGGGCCAACCATTCTAAGCCAAGGAAATCGCTTCATTGCTCCTCCTAACAATGCTGCAAAGGAGATCACACATAGAGACTATGCAGGACCAGAAGTGTGGAAGAATTGGCAATGGACATCAGATATGGATCTGTTCATGAATGGTGCAAAGTTTGTTCCTTCAGGGCTACCTATTAAAAATGTGCCATACAAAAAAGGTTTCATGATGAAACCAAGAGATGGATCTCATGCCAATAGGCTAACAAGGTTTGCTGGTGCCCTTGCTTGCAGGGTGGGCAAGCCTTGTTAG 1335 0.4472 MGKIMVGSASKVTFIFLVTLAITIPCLEAGIAEFDDFLKVQAEKAHRLALASYVPIPEEVTEDLNLHVHLALDETSNNTRRELKQKYQGPCTATNPIDTCWRCNQNWAKNRFKLAKCGKGFGRRATGGLGGPIYVVTDESDNDMISPKPGTLRFGVTQKGPLWIIFQRSMIIRLNQELLVSSDKTIDGRGVNVQIRDGAGITMQFVNNVIIHGLRIKNVVSKPGGMMRDSYNHVGLRTRSDGDAISIYGSTNIWVDHVSMSNCEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVVNNDYTHWQMYAIGGSSGPTILSQGNRFIAPPNNAAKEITHRDYAGPEVWKNWQWTSDMDLFMNGAKFVPSGLPIKNVPYKKGFMMKPRDGSHANRLTRFAGALACRVGKPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi137g00015 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Gabi137g00015 444 Gene3D - 94 437 IPR012334 -
Gabi137g00015 444 Pfam Pectate lyase, N terminus 31 83 IPR007524 GO:0030570
Gabi137g00015 444 PANTHER PECTATE LYASE 18-RELATED 48 442 IPR045032 GO:0030570
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Gabi137g00015 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Gabi137g00015 444 SMART amb_all 169 366 IPR002022 -
Gabi137g00015 444 Pfam Pectate lyase 178 360 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi137g00015 Gabi-Chr137 111486 113668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi137g00015 14 444 Polysaccharide Lyase AT1G14420 56.600 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi137g00015 K01728 - gmx:100785801 732.25