Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi137g00005 ATGATGGGGTTTGGGGATAATGCAATTCAGGCAGGGAGTTTGGATGTTGACAAGTCAAAGGGAAAGAAGAATGTAAATGGTGCAAAGAAGAAGAGAGGATGGCGCTTTAGATTCAGTTTCTTTGGTAGCTGCATACCTTCAAGGTCAAAAGTTGATAGCTCCATAAGTGGCACTACTACCCATAATGGTGACAATACCAAGTTGGTGATAATTGAACCAGAGGAAAACAAATCTGCATTTGAAAAAAGCACAAAGGAAACAGTTGCTCCTCCAGAGTCCTCTACAACAATTAGTAATGTGGAAAGTATCCCTTCCACTCCAAAATTCAGTGAGGAGTTGAAGTTTGCTTCTTGTTTGAGAAAATTCACATTCAATGGACTTAAGTTGGCAACTAGGAGTTTCAGACCAGAGTCTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCAGGTACTGGGCTTACAGTTGCAGTCAAGATCCTCAACCAAAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAACTATCTGGGTGATCTTGTCCATCCTAATCTTGTTAAATTGGTTGGTTTCTGCATTGAAGGTGACCAAAGATTATTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAAAGGGCCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCACAGGCCCATAATATATCGCGATTTCAAAACATCTAATATCCTATTAGATGCGGATTACAACGCAAAGCTTTCTGATTTTGGGCTTGCCAAAGATGCTCCTGAGGGGGAAAATACACATGTAACAACAAGAGTTATGGGAACATATGGCTATGCTGCTCCAGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACTGGCCGGAGAACCATTGATAAGAAAAGACCAAATGGGGAACACAATCTGGTGCAGTGGTTAAGACCTATACTTGGAGACAGAAGGATGTTATTCCAGATAATCGATCCGCGCCTTGAAGGTCACTTCTCAGTTAAAGGGGCACAGAAAGCTGCTCAGTTGGCTGCTCAATGCCTTAGCCGTAATCCAAAATCTAGACCTTTGATGAGTGAAGTTATTCAAGCTTTAAAGCCTTTGCCAAACCTTAAGGATATGGCTATCTCATCTTATCACTTCCAAATTGCACAAGTAGGTCGCACTATGTCCATGCCAAAGCCTAAAAATGGTATTAGAACACACTTAGTGTCTTTACCAAGAAAGGGTCAACCTGTAAGGACCTTGTCAAGTCCAAATGGTCAACATGCTTCTCCATATCCTCTTTATAGCAAGTCTCCAAAACCTATTGGGTAA 1467 0.4213 MMGFGDNAIQAGSLDVDKSKGKKNVNGAKKKRGWRFRFSFFGSCIPSRSKVDSSISGTTTHNGDNTKLVIIEPEENKSAFEKSTKETVAPPESSTTISNVESIPSTPKFSEELKFASCLRKFTFNGLKLATRSFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKILNQNGHQGHKEWLAELNYLGDLVHPNLVKLVGFCIEGDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAHRPIIYRDFKTSNILLDADYNAKLSDFGLAKDAPEGENTHVTTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRTIDKKRPNGEHNLVQWLRPILGDRRMLFQIIDPRLEGHFSVKGAQKAAQLAAQCLSRNPKSRPLMSEVIQALKPLPNLKDMAISSYHFQIAQVGRTMSMPKPKNGIRTHLVSLPRKGQPVRTLSSPNGQHASPYPLYSKSPKPIG 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi137g00005 488 ProSiteProfiles Protein kinase domain profile. 134 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi137g00005 488 FunFam Probable serine/threonine-protein kinase PBL8 220 435 - -
Gabi137g00005 488 CDD STKc_IRAK 140 418 - -
Gabi137g00005 488 SUPERFAMILY Protein kinase-like (PK-like) 108 415 IPR011009 -
Gabi137g00005 488 PANTHER OS01G0588500 PROTEIN-RELATED 86 418 - -
Gabi137g00005 488 MobiDBLite consensus disorder prediction 457 488 - -
Gabi137g00005 488 Gene3D Transferase(Phosphotransferase) domain 1 220 435 - -
Gabi137g00005 488 ProSitePatterns Protein kinases ATP-binding region signature. 140 172 IPR017441 GO:0005524
Gabi137g00005 488 MobiDBLite consensus disorder prediction 79 101 - -
Gabi137g00005 488 MobiDBLite consensus disorder prediction 461 477 - -
Gabi137g00005 488 Gene3D Phosphorylase Kinase; domain 1 118 219 - -
Gabi137g00005 488 MobiDBLite consensus disorder prediction 87 101 - -
Gabi137g00005 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gabi137g00005 488 Pfam Protein kinase domain 137 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi137g00005 488 FunFam Serine/threonine-protein kinase BIK1 101 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi137g00005 Gabi-Chr137 72679 76712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi137g00005 120 431 Glycoside Hydrolase AT3G07070 53.503 3.19e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi137g00005 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi137g00005 - - gmx:100499647 798.119