Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi137g00002 ATGGCTGACAATGATGCCATGCATGCTGTTGTGAAGGAAGCTGTGGATTTGGAAAACGTGCCACTTGAGGAGGTGTTTCAGAATCTGAGGTGTGATTCAAATGGACTCACCACAAATGCTGCTCAAGAGAGGTTGGCCATCTTTGGCTACAACAAACTTGAGGAGAAAAAGGAGAGCAAGTTTTTGAAGTTTTTGGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCAATTGCTTTGGCCAATGGAGGAGGCAAACCTCCGGATTGGCAAGACTTTGTTGGTATCATCACACTCCTTATTATCAATTCAACAATAAGTTTCATAGAGGAGAACAATGCTGGTAATGCTGCTGCGGCTCTCATGGCTCGTTTAGCACCCAAAGCAAAGGTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCTAGTATTCTTGTTCCCGGTGATATAATTACTGTTAAGCTAGGGGATATTATCCCTGCAGATGCTCGTCTACTTGAAGGTGATCCATTGAAGATTGATCAGTCTGCACTTACTGGCGAGTCTCTTCCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCTACATGCAAGCAGGGAGAGATTGAAGCAGTTGTTATTGCCACAGGAGTTCATACCTTCTTTGGCAAGGCTGCTCATCTTGTGGACTCCACAAATCAAGTTGGGCACTTTCAGAAGGTCCTGACTGCTATTGGGAACTTTTGCATATGTTCAATTGTTGTGGGAATGATAGTAGAGATTATTGTCATGTACCCAATTCAACACCGAAAATATCGTCCTGGGATTGACAATCTTCTTGTGCTTCTTATTGGAGGAATTCCTATAGCCATGCCTACTGTTTTGTCAGTGACAATGGCAATTGGATCCCATCGCTTAGCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAGATGGCGGGTATGGATGTACTGTGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTAACAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGACTCAGATACTGTTGTTCTCATGGCTGCTCGAGCTTCCAGAGTGGAAAACCAAGATGCTATAGATGCTGCTATTGTAGGGATGCTGGGAGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTTCCCTTCAATCCAACTGACAAGCGTACTGCTTTGACTTATATAGACAGTGACCGTAAAATGCATCGTGTCAGCAAAGGTGCACCAGAGCAGATTTTAAATCTTGTGCCCAATAAATCAGAGATAGAACGAAGAGTTCATGCTGTCATTGATAAGTTTGCAGAGCGGGGCTTACGGTCTCTTGCAGTATCTTATCAGGAAGTTCCTGACGGAAGAAAAGAAAGCCAAGGAGGGCATTGGCAATTTATTGGACTTATGCCTTTGTTTGATCCTCCTAGACATGATAGTGCAGAGACAATACGAAGGGCATTAAATCTCGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGCAAAAGAAACAGGACGCCGTCTAGGGATGGGAACCAACATGTACCCGTCATCGGCATTATTGGGCCAAAACAAGGATGAAGCAATTGCTACCTTGCCAGTTGATGAATTAATTGAAAAAGCTGATGGATTTGCTGGCGTTTTTCCTGAGCACAAATATGAGATCGTGAAGCGTTTACAAGCTAGGAAACACATATGCGGAATGACTGGTGATGGGGTTAATGATGCCCCTGCTCTTAAAAAAGCAGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTCGTGGTGCTTCTGACATTGTTCTGACTGAACCAGGTCTCAGTGTTATCATTAGTGCTGTACTGACCAGTCGGGCAATTTTCCAAAGGATGAAGAATTACACAATCTATGCTGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGGAATTTGATTTTCCACCGTTTATGGTGCTGATTATTGCTATCCTTAATGATGGTACCATTATGACAATATCAAAGGACAGGGTAAAACCATCTCCATATCCAGATAGCTGGAAGCTGGCAGAGATCTTCACCACAGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCTGCGTATAAAACAGATTTTTTCCCTCGCACATTTGGGGTCTCAAGTCTTCAGAAAAAGGACGAGGATGACTTCAGAAAGCTTGCCTCAGCAATATACTTACAAGTTAGTACAATTAGTCAGGCTCTCATATTTGTCACACGTGCACGGAGTTGGTCTTTTGTTGAGCGTCCGGGTTTGTTGCTCGTAGCAGCTTTTGTTATTGCCCAGCTGATAGCTACAATAATTGCAGTTTATGCAAATTGGAGTTTTGCTGCAATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTATAACCTCATCTTCTATTTCCCACTTGATTTTATCAAGTTCATAATTCGATATGCCTTGAGTGGCAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAAGATTTTGGAAAGGAAGAACGCGCACGTAAATGGGCACATGATCAGAGGACCCTTCATGGCCTTCACCCACCAGAGACCAAGATGTTCAGTGAACGTACAAGTGAACTTAATCAGATGGCTGAAGAGGCGAAAAGACGAGCAGAGATTGCAAGATTGAGAGAACTGAACACGCTGAAGGGCCATGTTGAGTCAGTGATTAGAATGAAGGGCCTTGACATTGACACAATACAGCAAGCATACACCGTTTGA 2862 0.4298 MADNDAMHAVVKEAVDLENVPLEEVFQNLRCDSNGLTTNAAQERLAIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWIEEDASILVPGDIITVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIVVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEIFAKGVDSDTVVLMAARASRVENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTALTYIDSDRKMHRVSKGAPEQILNLVPNKSEIERRVHAVIDKFAERGLRSLAVSYQEVPDGRKESQGGHWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQNKDEAIATLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRARSWSFVERPGLLLVAAFVIAQLIATIIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYFPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERARKWAHDQRTLHGLHPPETKMFSERTSELNQMAEEAKRRAEIARLRELNTLKGHVESVIRMKGLDIDTIQQAYTV 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi137g00002 953 Gene3D - 95 820 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Gabi137g00002 953 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Gabi137g00002 953 Gene3D - 904 953 - -
Gabi137g00002 953 PANTHER CALCIUM-TRANSPORTING ATPASE 18 888 - -
Gabi137g00002 953 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Gabi137g00002 953 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Gabi137g00002 953 SUPERFAMILY HAD-like 326 636 IPR036412 -
Gabi137g00002 953 Gene3D - 133 217 - -
Gabi137g00002 953 NCBIfam HAD-IC family P-type ATPase 564 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 NCBIfam HAD-IC family P-type ATPase 102 350 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 811 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi137g00002 953 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Gabi137g00002 953 FunFam ATPase 4 plasma membrane-type 574 820 - -
Gabi137g00002 953 FunFam Plasma membrane ATPase 133 217 - -
Gabi137g00002 953 SFLD p-type atpase 312 640 IPR044492 -
Gabi137g00002 953 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 PRINTS H+-transporting ATPase (proton pump) signature 765 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi137g00002 953 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 852 IPR023298 -
Gabi137g00002 953 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Gabi137g00002 953 FunFam Plasma membrane ATPase 483 637 - -
Gabi137g00002 953 FunFam Plasma membrane ATPase 342 489 - -
Gabi137g00002 953 Gene3D - 342 489 IPR023299 GO:0000166
Gabi137g00002 953 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Gabi137g00002 953 CDD P-type_ATPase_H 35 846 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi137g00002 953 Gene3D - 327 626 IPR023214 -
Gabi137g00002 953 Coils Coil 904 924 - -
Gabi137g00002 953 Pfam E1-E2 ATPase 131 310 - -
Gabi137g00002 953 SFLD Haloacid Dehalogenase 312 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi137g00002 Gabi-Chr137 38564 46951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi137g00002 3 953 Primary Pumps ATPases AT3G47950 88.353 0.0 1714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi137g00002 K01535 - gmx:100805218 1701.8