Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1375g00008 ATGTCACCCAGCTTCCTGTTTGAACCTCCCAGCGACGAAGAAATCGAACACTCGGAACACGAAGAAGAAGCTGAATCTGAATCTGAACCTGAACCAGAATCAGAATCAGAATCAGAATCAGAAGAACATAAGGAAGCACGAGTTTCAAAGAAGAAAACGCAGTCTCCATGGGACTTCGCCAAATATTCGGAATCTGTCGCCGAGGAGCACGCTCGCCGGAGCACAACCTCCGTCGACGAGAAAATCTCCAAAGCCCTCAGACAACGTTCCACGCCGCTCGTTGCAGTGCCCGACCAAGACCACGACAGCTCTGATTCCGAACCCGACCAACAAGAAGATTATAGAGAGGAAGAAGAAGATGAAGAAGAGGGTAATGGTGGTGATAGCAAGTCCTTTTTTGCTCCTTCTGATGGAGCCTCTTTCCATGCTGATTCCTTCTTACAGCTCAATTTGTCTCGCCCGTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCAAAACCAACACCAATTCAGGCGGCATGTGTACCATTGGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGGAAGACGGCTGCATTTGCACTGCCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCATGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAATTGGCTGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCTATGTCGGTGGATTTGGATGACCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAATGCTGAAATTAATGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACCATGCTATTTTCCGCAACCATGACTGAGGAGGTTGACGAACTTATTAAACTTTCTCTGTCTAAACCCTTGCGTCTTTCTGCTGACCCATCTACTAAACGGCCAGCTACCTTGACTGAGGAGGTGGTTAGAATACGGAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTGGCAATGTGCACCAAAACTTTCACTTCTAAAGTTATCATCTTCAGTGGAACAAAGCAAGCTGCGCATAGATTGAAGATTATGTTTGGTTTAGCTGGCTTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGAGTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACGGTTATCAACTTTGCATGTCCGCGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCAAGAGCTGGAAGAGAAGGATATGCTGTCACATTTGTGACTGATAATGACCGGTCTCTTTTAAAAGCCATTGCAAAGAGGGCGGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTTAAGTGGTCTCATATAATTGAGCAAATGGAGGATCAAATTGCTGATGTACTTCAAGAAGAGAGGGAAGAAAGAGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAAGAAATCTATTCCCGCCCCAAAAGAACATGGTTTGTCACAGAGAAGGAGAAGAAGCTTGTTGCGAAAGCAGCCAAGGCATCCATGGATAAGGAAAAGGGTTCTAGGAAGGAGGTAATTAGTGCCCAACAAGCTGATGACCTCAGAACGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCTAGAAAGAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAAGATGAGGGACAGGATGACAAGCCAGGAGAAGCTAAGGGGTCAGATAAGAAAGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGAGCAAAAGCAGTGAAGGCTGTCAAGAAGGCGTTAGATGCTGGCAAGATTGTGAAGAAGAGTACAAAGAAACCTAATCATCCTTCCCGAAAGGCTACTTCAAGGACTGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCCAAAAAGAGAGGTGTTGGTGAAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2253 0.4585 MSPSFLFEPPSDEEIEHSEHEEEAESESEPEPESESESESEEHKEARVSKKKTQSPWDFAKYSESVAEEHARRSTTSVDEKISKALRQRSTPLVAVPDQDHDSSDSEPDQQEDYREEEEDEEEGNGGDSKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACVPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEINELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLKIMFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVEFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIEQMEDQIADVLQEEREERVLRKAEMEATKAENMIAHKEEIYSRPKRTWFVTEKEKKLVAKAAKASMDKEKGSRKEVISAQQADDLRTKEKRKREREKNLPRKKRRKLEAAREMLEDEGQDDKPGEAKGSDKKEKGGMSLVDLAYRRAKAVKAVKKALDAGKIVKKSTKKPNHPSRKATSRTEEMRELFQTDMKDKKPKKRGVGEGKKSKSSFKSKSRYKRK 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 630 667 - -
Gabi1375g00008 750 Pfam DEAD/DEAH box helicase 168 338 IPR011545 GO:0003676|GO:0005524
Gabi1375g00008 750 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Gabi1375g00008 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 523 IPR001650 -
Gabi1375g00008 750 Coils Coil 529 569 - -
Gabi1375g00008 750 CDD SF2_C_DEAD 361 493 - -
Gabi1375g00008 750 Gene3D - 351 519 IPR027417 -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 15 36 - -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 687 750 - -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 704 740 - -
Gabi1375g00008 750 SMART ultradead3 163 364 IPR014001 -
Gabi1375g00008 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 504 IPR027417 -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 592 667 - -
Gabi1375g00008 750 SMART helicmild6 399 484 IPR001650 -
Gabi1375g00008 750 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 592 623 - -
Gabi1375g00008 750 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 98 701 - -
Gabi1375g00008 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 349 IPR014001 -
Gabi1375g00008 750 Pfam Helicase conserved C-terminal domain 381 484 IPR001650 -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 105 125 - -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 1 134 - -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 63 86 - -
Gabi1375g00008 750 Gene3D - 92 350 IPR027417 -
Gabi1375g00008 750 MobiDBLite consensus disorder prediction 37 54 - -
Gabi1375g00008 750 CDD DEADc_DDX27 155 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1375g00008 Gabi-Chr1375 147303 161112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1375g00008 100 501 Eukaryotic Initiation Factors Gene Family AT3G13920 32.759 3.52e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1375g00008 K13181 - gmx:100776684 1086.63