Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1375g00004 ATGAGCTGCTTTCAATGTTGTATGTCACAAGAGAAGATCAATAGGAAATCATTGAAGAAGAGCATTAAGGAATACCATGCTGCAAAAACTCTATCCTCATTTGCCAACATCTCTTTTAGAAGTGATAGTGGCAAGCGAAGGTTCATAACAGAAGAGATAGCAAAGCTTGGGAAAGGAAATGTTACCTCTAAGATTTTCTCATTTCGTGAACTATGCAATGCAACTCAGAATTTTCACCATGCCAATATGATTGGTGAAGGAGGCTTTGGGAGGGTTTACAAAGGATGCCTTAAAAGCACAAATCAAGTTGTTGCTGTGAAGCAACTAGACAGGAATGGATTTCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCACCACCCTAACCTTGTCAACTTGGTAGGGTATTGTGCTGAAGGTGATCAGAGGATTTTGGTATATGAATACATGGTCAATGGTTCGTTAGAAGATCATCTACTAGAATTAACTCCTGACAGAAAGCCTTTGGACTGGCATACTAGAATGAAAATTGCAGAAGGTGCAGCAAGAGGACTTGAATATTTACATGAAGTAGCAAACCCACCAGTGATATATCGTGATTTCAAGGCATCAAACATACTGTTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGAGATAAATCACATGTATCCACAAGAGTGATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCATTAACAGGACAGTTGACTACTAAATCAGATGTGTACAGCTTTGGAGTAGTGTTTTTGGAGATTATCACAGGAAGAAGAGTTATTGATTCTTCAAGGCCATCAGAAGAACAAAATTTAGTCCTTTGGGCACAACCACTTCTCAGAGACAGATTGAAATTTACACTAATGGCTGATGCATTGCTAGAAGATAACTACCCCGTAAAGGGTCTATACCAAGCTCTAGCAATAGCAGCAGTGTGTCTTCAAGAGGAAGCTGATACCCGGCCTTTGATCAGTGACGTGGTTACAGCTCTTGACTTTTTAACAAGGAAGAGAATAGAAGTGGATGAACCACAACATACAAAAGAGACTTCTTCTGCTCAGAATGGAGACAGCAGTGGAGAAAATGAATCTGATGTAGTAGATGATGATGATGATGATGAA 1185 0.3949 MSCFQCCMSQEKINRKSLKKSIKEYHAAKTLSSFANISFRSDSGKRRFITEEIAKLGKGNVTSKIFSFRELCNATQNFHHANMIGEGGFGRVYKGCLKSTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGDQRILVYEYMVNGSLEDHLLELTPDRKPLDWHTRMKIAEGAARGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDSSRPSEEQNLVLWAQPLLRDRLKFTLMADALLEDNYPVKGLYQALAIAAVCLQEEADTRPLISDVVTALDFLTRKRIEVDEPQHTKETSSAQNGDSSGENESDVVDDDDDDE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1375g00004 395 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1375g00004 395 PANTHER OS07G0668900 PROTEIN 3 364 - -
Gabi1375g00004 395 Gene3D Phosphorylase Kinase; domain 1 50 154 - -
Gabi1375g00004 395 CDD STKc_IRAK 84 353 - -
Gabi1375g00004 395 MobiDBLite consensus disorder prediction 363 395 - -
Gabi1375g00004 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi1375g00004 395 Gene3D Transferase(Phosphotransferase) domain 1 155 379 - -
Gabi1375g00004 395 SUPERFAMILY Protein kinase-like (PK-like) 64 365 IPR011009 -
Gabi1375g00004 395 FunFam Serine/threonine-protein kinase PBS1 155 372 - -
Gabi1375g00004 395 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Gabi1375g00004 395 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1375g00004 395 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1375g00004 Gabi-Chr1375 75272 77928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1375g00004 1 372 Glycoside Hydrolase AT3G07070 61.257 1.75e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi1375g00004 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1375g00004 - - gmx:100790474 679.863