Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1372g00013 ATGGCAGACTTGTCAACTTTCTCAAATGGGTATTCCTTAGATTGCATTGGAGTTGAAGCTGATGGCGCATCTTGCCTTGTGGAAGATCATACTGATAACGCTGATGATGACATAGTTAAACAAAAATGCTTGTTTAATCAACTTTTTTCGGTTTACTTAAAGGAGGATTGTTCCAGAGGCATTGTTAGGCCTGTGCCAGTTTTTCTCGGGGATGGTAAATTGCTAGATTTGTATGAACTGTTCTCCCTTGTGAAGGAAAGAGGTGGCTATGCTGTGGTGTCTGTAAAAGGGTTGTGGGGTGATGTGACAAAGGAATTGGGTTTGAACCTTAAAATTTTGGCTTCTGTAAAATTAGTTTATAATAAGTATCTGAATGATTTTGAAGGATGGCTCAGGAAGACTTTTGAGGAGAACAGTTTCAAAAATGAGAACCACTTGTCTGATTGGGGTTTTAAGTCGTCGCTGTTAGAGCTTGAGAAAGAGTTTAGATGCCTCTTATGTCCAAAGCAAAAGGAGAAAGATGATGAACTTTTCCTGTTAGAATCAAATAAAATTAGAAATTACATTGATCTGGTTAACCATAAGAGTGATACTAATTTGTTGGATGCCAAATATCAAATTATCAAATGTGAGGGTGTCCCACTTGTCAATGGTGATGATGATGAAAATTTCTGTAATTGTGTGAAGGATGATCTTGCTACCACTCTTGCAGAAGTTGCTGAGAAGGAATTTAACAGTCGTAAACGCAAACGGGAAGCATTATCTGGAATGCTAAACTGGATGAAGCAGATTGCAAAGAATCCTCTTGATCCTGTAACTGAACTGATACCAAAACCATCAAAATGGAAGGAGTATAAAGGCCAGAACTTTTTTGTCCAGTTAATGAGGGCAAGAGAGGTTCTGTCGCTGAGGCAGCCTGTAGAACCAAACAGTGGACCATCTTCTTTGCAGAAGCTGAAGATGCATCCTTCCATATATGAGGATCATGTTGGCCATCATGTTACGGCGAAATTGAGATGTAGCAGAAGGCTGCCTACCTGTGTTAAATCTCGCTCGTGCTCTGGCTGCAATTCATGTTCCACCAATGGAAAGAGATTAGAAATTTCGGTCAATACGGAGGCAGAAAAATGTCCTCCGGAGAAAACAACGCCAATGGCTGAGCCAGCTGGGGATGATTTTCTCAAAAAGCAAGTTTCTATAGGTCCTCTATTCCAAGCAGAAATCCCAGAATGGACTGGTGTAATTTCTGAGAGTGACCCGAAATGGTTAGGCACACAAGTATGGCCTTTGAAACATGACTCAAAACCTTCTACTGAAACAGATCTTATTGGGAGAGGAAGACAAGAGAAGTGTAGCTGCCAATTTCAAGGTTCTGTTGAGTGTGTTAGATTTCATATTGCTGAAAATAGGATGAAATTGAAGCTTGCATTGGGTTCTGTATTTTACCATTGGGGATTTGATCGTATGGGTGAGGAAGTTTCCCTTCAATGGACAACTGAAGAAGAAAAGAAATTCAAGGATATAATGAGGTCAAAGATTCCCTCCCAAGGTAGGAGTTTTTGGAACAATTCATCCAAATACTTTCGAAAGAAGACGAGAAGAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAATTAAGAAGCTATCAGAATCGTGTGACTCCAAAGAGTGTTGATAGTGATGATGATGAAGTAGAATTTGGATCTTTAAGTGATGGTTTTGGGATGGAAGCTATCAAGGGTCCACGTATTAATTTCCTGGAGTGTTCAGAGAATAAGCAGTGCACTGATTTGGAGTAG 1806 0.3976 MADLSTFSNGYSLDCIGVEADGASCLVEDHTDNADDDIVKQKCLFNQLFSVYLKEDCSRGIVRPVPVFLGDGKLLDLYELFSLVKERGGYAVVSVKGLWGDVTKELGLNLKILASVKLVYNKYLNDFEGWLRKTFEENSFKNENHLSDWGFKSSLLELEKEFRCLLCPKQKEKDDELFLLESNKIRNYIDLVNHKSDTNLLDAKYQIIKCEGVPLVNGDDDENFCNCVKDDLATTLAEVAEKEFNSRKRKREALSGMLNWMKQIAKNPLDPVTELIPKPSKWKEYKGQNFFVQLMRAREVLSLRQPVEPNSGPSSLQKLKMHPSIYEDHVGHHVTAKLRCSRRLPTCVKSRSCSGCNSCSTNGKRLEISVNTEAEKCPPEKTTPMAEPAGDDFLKKQVSIGPLFQAEIPEWTGVISESDPKWLGTQVWPLKHDSKPSTETDLIGRGRQEKCSCQFQGSVECVRFHIAENRMKLKLALGSVFYHWGFDRMGEEVSLQWTTEEEKKFKDIMRSKIPSQGRSFWNNSSKYFRKKTRRNLVSYYFNVFLIQLRSYQNRVTPKSVDSDDDEVEFGSLSDGFGMEAIKGPRINFLECSENKQCTDLE 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1372g00013 601 SMART bright_3 40 133 IPR001606 GO:0003677
Gabi1372g00013 601 Gene3D - 30 142 IPR036431 GO:0003677
Gabi1372g00013 601 SMART ELM2_2 398 448 IPR000949 -
Gabi1372g00013 601 SUPERFAMILY ARID-like 40 133 IPR036431 GO:0003677
Gabi1372g00013 601 CDD ARID 45 128 - -
Gabi1372g00013 601 Pfam ARID/BRIGHT DNA binding domain 53 128 IPR001606 GO:0003677
Gabi1372g00013 601 ProSiteProfiles ARID domain profile. 39 132 IPR001606 GO:0003677
Gabi1372g00013 601 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 35 596 - -
Gabi1372g00013 601 SMART ARID_2 36 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1372g00013 Gabi-Chr1372 120282 135900 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi1372g00013 ARID 2.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1372g00013 - - gmx:100819320 806.979