Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1372g00011 ATGGGCTGTTGGTGCTGTTGTTGTTCTTCCAAGGAAACTGAATTGAGCGCTCCACCTGCATACTATTATTACCCAAGAGCATCAGAGGAGCATGTTCCACTATCATCTCACCAGGGTGCTGCCTCTGCTTTCTTTGGGAGGCTGTTGGTTGATACTAATCTAGATACTTCTAGTCCTAATACATATAGACCACCTCCTCCTCCTATCCCTTTCAATGTTACGTTAGGTGCCGCTCAAACTCCACCTGTGGCTCAAGAAATTTATGGTGACAAGAATAATACATCCTTGCATTCCTCAAATTCTAATTCAGTTCAAGAACTAGTTGCTGGAGACAATCATGGGAACTCAGCTAAGTTGGAAGAGCTGAAGGAATCAGAGTGCAAAGTTCAGACTGATCTAGAACAAGACTTGGCAAAGGATTCTGAAATTGAACTTCCAAAGTTGGGAGAACCTATAAATTTAGCAGAAGAGGAAGATGCATGCCCAATTTGTTTAGAAGAGTATGATGCAGAGAATCCAAAACTTACCACAAAATGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGTCCTGTGTGTGATCAGGATATGGTTTTCAATCCTCCCATTGAATAA 639 0.4163 MGCWCCCCSSKETELSAPPAYYYYPRASEEHVPLSSHQGAASAFFGRLLVDTNLDTSSPNTYRPPPPPIPFNVTLGAAQTPPVAQEIYGDKNNTSLHSSNSNSVQELVAGDNHGNSAKLEELKESECKVQTDLEQDLAKDSEIELPKLGEPINLAEEEDACPICLEEYDAENPKLTTKCDHHFHLACILEWMERSETCPVCDQDMVFNPPIE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1372g00011 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Gabi1372g00011 212 SMART ring_2 161 201 IPR001841 -
Gabi1372g00011 212 FunFam Putative E3 ubiquitin-protein ligase RHB1A 138 206 - -
Gabi1372g00011 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Gabi1372g00011 212 SUPERFAMILY RING/U-box 155 208 - -
Gabi1372g00011 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 42 208 - -
Gabi1372g00011 212 Pfam Ring finger domain 160 201 IPR001841 -
Gabi1372g00011 212 CDD RING-H2_AIRP1-like 157 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1372g00011 Gabi-Chr1372 104627 107328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1372g00011 1 208 C3H Transcription Factor Family AT5G41350 54.245 5.15e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1372g00011 - - gmx:100816369 358.221