Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1372g00004 ATGGGATTTCCAGTGGGGTATACAGAGGTTCTCTTTCCGAAGCTGTTTCTGAACTTGCTCTCTGTTTTGGGTTTCATCAGAAAACTGATCTGCACCCTGTTCCGCTATCTGGGTCTCCACGATTTCCTCGAACCCGACATTGCCTGGCCCGACGCTTCCACCCGGATACCCGAATTCGAATCGGTGTCGGCTCTCCTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAACTGGTGGACCCACCCGAGAGCTGCGCGGTGTGTCTGAGCGAGTTCGACGAAAACGATGAGATCAGACGGCTGGCGAACTGTCGACACATATTCCACCGAGGATGCCTGGACCGTTGGATGGGGTACGATCAGAGAACGTGCCCCCTGTGCCGAACACCCTTCATACCAGATGATTTGCAAGGTTCCTTCAACGAGAGACTCTGGGCTGCTTCTGGGATCCCTGAATTTTACTCTGATTACCCTCATGTTGGTTCTTTATAG 495 0.5354 MGFPVGYTEVLFPKLFLNLLSVLGFIRKLICTLFRYLGLHDFLEPDIAWPDASTRIPEFESVSALLIREILPVVKFRELVDPPESCAVCLSEFDENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDLQGSFNERLWAASGIPEFYSDYPHVGSL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1372g00004 164 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Gabi1372g00004 164 SMART ringv_2 85 129 IPR011016 GO:0008270
Gabi1372g00004 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 149 - -
Gabi1372g00004 164 Pfam Ring finger domain 85 129 IPR001841 -
Gabi1372g00004 164 SMART ring_2 86 128 IPR001841 -
Gabi1372g00004 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 135 IPR013083 -
Gabi1372g00004 164 SUPERFAMILY RING/U-box 66 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1372g00004 Gabi-Chr1372 54483 54977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1372g00004 1 150 C3H Transcription Factor Family AT1G63840 60.645 3.02e-61 185