Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1372g00002 ATGGGTTCATCAAATGGATTCTGCTATTCGGATTTGTCATCCGGTAACCAAACGATTCATCAAACCCATTTGGTGAACCATATCCAAGGCTTTGTGTCCGACCCGGAGATGTTCAACCTCACAACCGGCATGGAGATGATAGGGTTTTCCAAGAATCTTCAGCAGCAGAGTGACACCAACTCCGTCATGTGGAAAAGTTTCTTAGGCAAACCTGGTCAACACGCGGGTCCTTCCTCTTCCAAAACCATGAACGAGTCTTCTAGCAACTTCTATCATCAGCTTGAGTATAATAAACAAGATTTCACATCAGGGATTTCTGAAACAAGTAGCGACAATCTAATCATCGGTGCTCATGATTCTTCCCCGTGGCATGAGAATAACAGATTACTAGTTGACGATTCATCTTTAAGGTGTGTGTTCCCTTGTGAAGCTAATGAAAGGCCAAGTCAAGGTCTTTCACTTTCTCTTAGTTCAACCAACCCTTCGGGTATTGGGTTGCAATCTTTTGAGCTAAGACAAACTAGTCATCATCAGCACCAACCTGATTTTGTTTCTTCAACTTCTAGAAATGGGTTCTTCTTCGGAAAATCAACCAATTCTCAACATCAACAAATGTTGCAAGATGATGGGTGTTTTAGTGCTAAAGCTGCAAATGTTTATCAAGGACATTTCCTGCTCAAGAACTCCAAGTTCTTGGTACCTGCACAGGACCTTCTGAACGAGTTTTGTAGTCTAGGGACAAAGCAAAATGATGTACAAAAGCAAAAGTCTCAAAAGAACAAGCAGTTGGAAGAGGATAACACTAAGAAGCACTCTCTTAGCTCTCTTGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGAAAGAAGATACAGTCACTACTGCAATCAAATGAAGGCTGTGGTTTCCTCCTTTGAAGCAGTGACTGGCAATGGAGCCGCCACAGTTTACTCGGCGTTGGCTTTGAAAGCCATGTCAAGACATTTCAGATGTTTGAAGGATGGGATTTTGGATCAGATTGAGGGAACAAGGAAAGCCATGGGAGAGAAAGACACAGTTGTAGCAGGCACGACAAGGGGTGAAACACCTAGGCTTAGAATCATTGATCAAACACTGAGACAACAAAGGACCTTCCAACAAATCAACATGATGGAAACTCATCCATGGAGACCCCAACGTGGCCTTCCCGAACGATCCGTCTCAGTTCTTCGGTCTTGGCTTTTCGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTTTAGCCCGCCAAACTGGTCTCTCTAGAAGCCAGGTTTCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAGCCAAGGAGCATGAAAACAACAACATGGCATCCTCAGAGGGAGGCATCAACTCTGAAGAGGATATTAGCTGTAATGTTCAAAACCCATCTCCTTCAAAACGACATGATGAGGATCACAAGCCAACAAAAGCTAGACTCCTTCGAATTGACTCGGAGTGTGTGTCGTCCATGATCAATAACCAGCAAGATCGTAAAAACGACCCAAAGAGCATTAAAACGATCCAAAACATGAGTCCTCATGAGGAACAATGTTTAGGGCGAGCCACGGAAACATTTGGGTCGGTGGAGCTTGATTTTTCATCTTATATGCACCACTCCTCTGGCATGGTTTCTTACACTGGCAGTGATCATGATGCCAATCAGAGTTTCCACGGTGGCAGTGGGGTGTCATTGACGCTAGGGTTACAACAGCACGGTGATCAAAGCGGGGTGAACTCGATGTTCTACCAAAGGGACCAGAATATTGAATACTGTCAACCAGTTCAGTATTCTCTTTTGGATGGTGAAGGACAAAATATGCCTTACAGGAACCTGATGGGGACACAGTTGCTTCATGACTTGGCATGA 1965 0.4407 MGSSNGFCYSDLSSGNQTIHQTHLVNHIQGFVSDPEMFNLTTGMEMIGFSKNLQQQSDTNSVMWKSFLGKPGQHAGPSSSKTMNESSSNFYHQLEYNKQDFTSGISETSSDNLIIGAHDSSPWHENNRLLVDDSSLRCVFPCEANERPSQGLSLSLSSTNPSGIGLQSFELRQTSHHQHQPDFVSSTSRNGFFFGKSTNSQHQQMLQDDGCFSAKAANVYQGHFLLKNSKFLVPAQDLLNEFCSLGTKQNDVQKQKSQKNKQLEEDNTKKHSLSSLEFVELQKRKTKLLSMLEEVERRYSHYCNQMKAVVSSFEAVTGNGAATVYSALALKAMSRHFRCLKDGILDQIEGTRKAMGEKDTVVAGTTRGETPRLRIIDQTLRQQRTFQQINMMETHPWRPQRGLPERSVSVLRSWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEAKEHENNNMASSEGGINSEEDISCNVQNPSPSKRHDEDHKPTKARLLRIDSECVSSMINNQQDRKNDPKSIKTIQNMSPHEEQCLGRATETFGSVELDFSSYMHHSSGMVSYTGSDHDANQSFHGGSGVSLTLGLQQHGDQSGVNSMFYQRDQNIEYCQPVQYSLLDGEGQNMPYRNLMGTQLLHDLA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1372g00002 654 Pfam Associated with HOX 226 344 IPR006563 -
Gabi1372g00002 654 Coils Coil 278 298 - -
Gabi1372g00002 654 SMART prehox3 220 346 IPR006563 -
Gabi1372g00002 654 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Gabi1372g00002 654 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 479 - -
Gabi1372g00002 654 MobiDBLite consensus disorder prediction 470 508 - -
Gabi1372g00002 654 Gene3D - 400 462 - -
Gabi1372g00002 654 FunFam BEL1-like homeodomain protein 4 400 462 - -
Gabi1372g00002 654 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Gabi1372g00002 654 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Gabi1372g00002 654 SMART HOX_1 397 461 IPR001356 GO:0003677
Gabi1372g00002 654 MobiDBLite consensus disorder prediction 474 496 - -
Gabi1372g00002 654 CDD homeodomain 397 458 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1372g00002 Gabi-Chr1372 13860 17806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1372g00002 86 654 Homeobox Transcription Factor Family AT5G41410 44.146 1.18e-129 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi1372g00002 POX 1.3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1372g00002 - - qsu:112025693 868.611