Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1371g00006 ATGTCTGTGCCATTAGAGCAAGGCTATGTAGGCTTAGCAGAAGTTCCTGCAATGGAAGGCTCTTCTGAAAAGTTTTCTCAGAAGACAAACTGTGGCTTAAACCTCAAGGCTACTGAACTGAGGCTTGGCTTGCCTGGTTCTGAGTCACCAGAGAGGGATAGTGATGGTGGTAGTGTGGTTGTTGAGGACAAGAGTGTGTACCCTTTAGGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAGAGGGGTTTCTCAGATACCATTGATGGTGGTTCTGAGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTGTGGGTAAAGATTGTGGCTTGTTCTCTCCAAGGGGTGTTGGTGTTGGTGCTGGAAAGACTCTTGCTGGGGCTGAGTGTAGCAACCAGCAACAAGCTTCTGTTATGAAAGATAAAATTCCTCAGTCTCCAAAGCCATTGAATGAGAAGAAACCGCAGATATCTGCTCCTGCTGCAAAGGAACAGGTAGTGGGATGGCCACCAATTCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTTGATCTCAAAATCTTTGGCACTTATAGGGAACTATCTTCATCACTGGAAAACATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTCATGGAGTTTCTAGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTGCTCACCTATGAAGATAAGGACGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCATTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATAGGACTAGCACCGAGAGCCATGGAAAAGTGCAAAAGTCGAAACTAG 957 0.4504 MSVPLEQGYVGLAEVPAMEGSSEKFSQKTNCGLNLKATELRLGLPGSESPERDSDGGSVVVEDKSVYPLGMLKSLVSGAKRGFSDTIDGGSEKWLLSGNGGSEVGVGKDCGLFSPRGVGVGAGKTLAGAECSNQQQASVMKDKIPQSPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYRELSSSLENMFSCFTISQCGSHGVSSRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1371g00006 318 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 305 IPR003311 GO:0005634|GO:0006355
Gabi1371g00006 318 Gene3D - 192 311 - -
Gabi1371g00006 318 SUPERFAMILY CAD & PB1 domains 195 299 - -
Gabi1371g00006 318 MobiDBLite consensus disorder prediction 145 165 - -
Gabi1371g00006 318 ProSiteProfiles PB1 domain profile. 198 300 IPR000270 GO:0005515
Gabi1371g00006 318 FunFam Auxin-responsive protein 193 310 - -
Gabi1371g00006 318 Pfam AUX/IAA family 38 309 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1371g00006 Gabi-Chr1371 48763 51873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1371g00006 201 303 B3 DNA Binding Superfamily AT2G46530 33.010 1.24e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1371g00006 AUX_IAA 5.7e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1371g00006 K14484 - gmx:100803754 515.383