Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1371g00005 ATGTCTGTGCCATTAGAGCAAGGCTATGTAGGCTTAGCAGAAGTTCCTGCAATGGAAGGCTCTTCTGAAAAGTTTTCTCAGAAGACAAACTGTGGCTTAAACCTCAAGGCTACTGAACTGAGGCTTGGCTTGCCTGGTTCTGAGTCACCAGAGAGGGATAGTGATGGTGGTAGTGTGGTTGTTGAGGACAAGAGTGTGTACCCTTTAGGCATGCTCAAGAGTTTGGTGTCTGGGGCTAAGAGGGGTTTCTCAGATACCATTGATGGTGGTTCTGAGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTGTGGGTAAAGATTGTGGCTTGTTCTCTCCAAGGGCTTCTGTTATGAAAGATAAAATTCCTCAGTCTCCAAAGCCATTGAATGAGAAGAAACCGCAGATATCTGCTCCTGCTGCAAAGGAACAGGTAGTGGGATGGCCACCAATTCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTTGATCTCAAAATCTTTGGCACTTATAGGGAACTATCTTCATCACTGGAAAACATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTCATGGAGTTTCTAGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTGCTCACCTATGAAGATAAGGACGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCATTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATAGGACTAGCACCGAGAGCCATGGAAAAGTGCAAAAGTCGAAACTAG 897 0.4448 MSVPLEQGYVGLAEVPAMEGSSEKFSQKTNCGLNLKATELRLGLPGSESPERDSDGGSVVVEDKSVYPLGMLKSLVSGAKRGFSDTIDGGSEKWLLSGNGGSEVGVGKDCGLFSPRASVMKDKIPQSPKPLNEKKPQISAPAAKEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYRELSSSLENMFSCFTISQCGSHGVSSRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1371g00005 298 SUPERFAMILY CAD & PB1 domains 175 279 - -
Gabi1371g00005 298 ProSiteProfiles PB1 domain profile. 178 280 IPR000270 GO:0005515
Gabi1371g00005 298 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 285 IPR003311 GO:0005634|GO:0006355
Gabi1371g00005 298 Pfam AUX/IAA family 38 289 IPR033389 -
Gabi1371g00005 298 MobiDBLite consensus disorder prediction 122 144 - -
Gabi1371g00005 298 Gene3D - 172 292 - -
Gabi1371g00005 298 FunFam Auxin-responsive protein 173 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1371g00005 Gabi-Chr1371 48763 51875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1371g00005 181 283 B3 DNA Binding Superfamily AT2G46530 33.010 1.15e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1371g00005 AUX_IAA 1.6e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1371g00005 K14484 - gmx:100803754 492.271