Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1367g00009 ATGGGTCGTGCAAAATTAGCCCTGAAACGTATCTCGAATGAGAGTGATCGTAAGTTAGCTTTCAAGAGGAGAAAGAAGGGAATAATGAAGAAAATGGCTGAATTTTCTACCATGTGCGGAGTTGATGCTTGCTTGATTATCTATGATGGCAACGGTGATGCTCAACCAGTGACTTGGCCCGAAAACTCTAGAAAGGTGCACTCCATCGTTGAAAAGTATGAGCTTACAAAGAATGAGAAACCGCATAAGAACTTTGATCTCGAAAACTTTTTTGAGAATAAGAAGAAGACGGTTGAATCTGAGATTTCCAAAGTGCAAAAAGATATCGTGAAGATTAAATATCCCACATGGCATCCAAGTTTCAATGGCCTAGAAGAAGAGCAGTTGAGTAATTTCATTGCTATGCTGGATACCAAGGTTGAAGCTTGTAAAAAAAGAATTAACATGTTGAAAAACAAGCATCAATCTGAAGCCAACATGAGTTCTATGCAGAACATGGCTCAATCAGAGAGTGCTGCCTCAGATTCCAGCCAACCAAATTTCACGCATAATATCACTCAAAGCCAAGACAGCATTATTCCTATGAAGCCAATTAATGATGAATACCAGCTAGCATCTTACCTACCTGAGCTTGATAAGGATTCTCAATCCCAAATGCTGAACTTCGATTCAAATCTTATGCAATTGATGGCCATGAAAACTAATCAAGTCAATGTGCCTCTGGGTTGTACCAACCAAGTTGGTGCTTTTGGAAATTCAAGGAATGAACTTGATGTTCCTGTAGATTGGACTAGTCAACTTGGTCAGCCACTGGATTGGGTTAGTCAACTTGGTGAAGTTGAAGCTTGGACTAGTGAACTTGGTGGGCTTGTGGATACGGGTAGTCCTCGTGAGTCTATAAATTGGACTAATCAGCTTGGTGGTTTTGGAAATTCAACTAATCAAATTGATGGGCCTGTAGATTGA 966 0.4017 MGRAKLALKRISNESDRKLAFKRRKKGIMKKMAEFSTMCGVDACLIIYDGNGDAQPVTWPENSRKVHSIVEKYELTKNEKPHKNFDLENFFENKKKTVESEISKVQKDIVKIKYPTWHPSFNGLEEEQLSNFIAMLDTKVEACKKRINMLKNKHQSEANMSSMQNMAQSESAASDSSQPNFTHNITQSQDSIIPMKPINDEYQLASYLPELDKDSQSQMLNFDSNLMQLMAMKTNQVNVPLGCTNQVGAFGNSRNELDVPVDWTSQLGQPLDWVSQLGEVEAWTSELGGLVDTGSPRESINWTNQLGGFGNSTNQIDGPVD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1367g00009 321 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Gabi1367g00009 321 Coils Coil 133 153 - -
Gabi1367g00009 321 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 MobiDBLite consensus disorder prediction 158 189 - -
Gabi1367g00009 321 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 PANTHER MADS BOX PROTEIN 3 148 - -
Gabi1367g00009 321 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1367g00009 321 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi1367g00009 321 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1367g00009 Gabi-Chr1367 208797 209762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1367g00009 1 165 Type I MADS-box Gene Family AT5G55690 31.765 6.17e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi1367g00009 SRF-TF 8.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1367g00009 - - aprc:113852359 322.783