Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1367g00007 ATGGCGAAACTATCACAGCAGAAAACCCAGAAAAACAATTCAAGCAATAATGATAACCTTGACGTAACTAACACTGTCACCACCAAGACCAAACGAACAAGGAGAAGTGTCCCTAGAGATACCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACAGGCCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGACGACAAGTCTACCTTGGTGCTTATGACGATGAAGAAGCGGCAGCACATGCTTACGATCTAGCAGCATTGAAATATTGGGGTCAAGAAACCATCCTTAACTTTCCGTTATCGATCTACCAGAATGAGTTGAAAGAAATGGAGGGTCAATCAAGAGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCGAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTTGGAACTTATGCTACCCAAGAAGAAGCTGCCACAGCATATGATATGGCAGCTATTGAATATCGTGGACTCAACGCCGTCACCAATTTCGATCTAAGCCGTTATATTAAGTGGCTTAAGCCCAATCACAACAACAATAACGATAATAACATAATTAGCTCTAATCTTATTGATTCTAACCCTAATTGTAACACCAACTTCACTCCAAACCCTAACGAAGAACAAGGGATCAACTTCTTCCACAGTCAACAACCATTCAATAATGTGGAAGAAGCAACATTGACTCAGCCTCGGCCAGCTGCTGCCACGTCAGCCCTAGGACTTTTGCTCCAGTCATCCAAGTTTAAGGAGATGATGGAGATGACATCTGCCGCGGATTTGTCGACACTGCCGCCGCCGGAGTCTGAGTTGCCGCCATGCACATTTCCCGATGACATTCAGACATACTTTGAGTGTGAAGATTCTAACAGATATGGAGAAGGGGATGATGATATCATGTTCAGTGAGCTAAATTCCTTTGTGCCCCCTATGTTCCATTGTGATGACTTTGAACCCTGA 1089 0.4435 MAKLSQQKTQKNNSSNNDNLDVTNTVTTKTKRTRRSVPRDTPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLSIYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNNNNDNNIISSNLIDSNPNCNTNFTPNPNEEQGINFFHSQQPFNNVEEATLTQPRPAAATSALGLLLQSSKFKEMMEMTSAADLSTLPPPESELPPCTFPDDIQTYFECEDSNRYGEGDDDIMFSELNSFVPPMFHCDDFEP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1367g00007 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 264 - -
Gabi1367g00007 362 Pfam AP2 domain 48 106 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 SUPERFAMILY DNA-binding domain 47 116 IPR016177 GO:0003677
Gabi1367g00007 362 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Gabi1367g00007 362 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Gabi1367g00007 362 Gene3D AP2/ERF domain 48 116 IPR036955 GO:0003700|GO:0006355
Gabi1367g00007 362 CDD AP2 47 116 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 MobiDBLite consensus disorder prediction 1 31 - -
Gabi1367g00007 362 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 ProSiteProfiles AP2/ERF domain profile. 48 114 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 SMART rav1_2 48 120 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 FunFam AP2-like ethylene-responsive transcription factor 47 116 - -
Gabi1367g00007 362 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Gabi1367g00007 362 MobiDBLite consensus disorder prediction 1 50 - -
Gabi1367g00007 362 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gabi1367g00007 362 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1367g00007 Gabi-Chr1367 145483 148137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1367g00007 44 212 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.08e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gabi1367g00007 AP2 7.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1367g00007 K09285 - gmx:100804555 570.852