Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1367g00003 ATGAAGAAAATAAACGAAAGAAGAAAGATATCTGGTCAGAGGGAAGTGAAGAGGAGACAAAGGAACTTAGAACCAGGAGACCTTCGGCAGCACAGGCCAAAAACAATAGTAGGAAAGCAGAAACTCACCAAAGAAAATGTTGAGAAGAAGCTTGAAATGGAGAGGAAGCCCAACATAGATTATGAATCCTCTTTTGGTAAAGCACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACACGTTTGCAGTTTCTACATAAGGGGTGAGTGTACGAGAGGAGCTGAGTGCCCTTATAGGCATGGGATGCCGATAACTGGGGAATTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCATTGAAGCTACTTGGCAAGGCAGGAGAGATGACCTCTTTGGAGGTTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGATTGGATGCGAGGGTCACTGAGCAGGATTTACGGGATCACTTTTATGCCCATGGAGAAATTGAATCAATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACTACCAGAGAAGCTGCAGAAAAGGCAGCTGAAGAACTTTCCAACAAACTGGTTATTAAGGGCCTTAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCATCAAAACCCGAGTCAGATGTCTCTGATCAAGCAAGGCAGCAGGCATCTGAGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCAGAGCAGCAGAACCAGGATCAAACCCAAGGAATGCTTTACTATAATAATCCACTTCCTCCTCCTCAGCAGGAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGATGCACTTGTCCCATCTCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAACCCAGCTTGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGATGCCTCCTCCACCTGGCCAATATCATCGCCAGTATTACCCTCCATATGGTTATATGACACCAGTTCCCCCTTATCAACAGTACCCTCCATCATACAATGCTGCAATGGCTCTATCACAGCTACCTGCTGCAAATCATCCCTATCAGCATTCTATGGAGCCAGGGTCTTTTTCACAGATTGGGTCTGCACCAGCCGAAACTGTAACATCACATTCAGGGTCACAGCAGCAGTGA 1233 0.4582 MKKINERRKISGQREVKRRQRNLEPGDLRQHRPKTIVGKQKLTKENVEKKLEMERKPNIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHGMPITGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEVPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGRPQSSKPESDVSDQARQQASEAHSGLLPRAVISEQQNQDQTQGMLYYNNPLPPPQQERSYYPSMDPQRMDALVPSQDGPPGGPSGSGENKPSLEKQQMQHYPHPMMPPPPGQYHRQYYPPYGYMTPVPPYQQYPPSYNAAMALSQLPAANHPYQHSMEPGSFSQIGSAPAETVTSHSGSQQQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 272 341 - -
Gabi1367g00003 410 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 45 307 IPR039171 GO:0003723
Gabi1367g00003 410 SMART rrm1_1 158 226 IPR000504 GO:0003723
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 229 257 - -
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 379 410 - -
Gabi1367g00003 410 Gene3D - 78 142 - -
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 233 249 - -
Gabi1367g00003 410 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Gabi1367g00003 410 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Gabi1367g00003 410 SUPERFAMILY RNA-binding domain, RBD 151 236 IPR035979 GO:0003676
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 384 410 - -
Gabi1367g00003 410 FunFam Zinc finger CCCH domain-containing protein 40 142 238 - -
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 8 35 - -
Gabi1367g00003 410 CDD RRM_RBM22 156 229 - -
Gabi1367g00003 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 230 IPR000504 GO:0003723
Gabi1367g00003 410 Gene3D - 143 240 IPR012677 -
Gabi1367g00003 410 SUPERFAMILY CCCH zinc finger 88 111 IPR036855 GO:0046872
Gabi1367g00003 410 MobiDBLite consensus disorder prediction 1 35 - -
Gabi1367g00003 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 217 IPR000504 GO:0003723
Gabi1367g00003 410 FunFam Zinc finger CCCH domain-containing protein 4 78 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1367g00003 Gabi-Chr1367 18689 27282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1367g00003 159 218 Eukaryotic Initiation Factors Gene Family AT1G49760 36.923 6.59e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1367g00003 K12872 - gmx:100810440 588.571