Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1366g00009 ATGTTTGCCGGAATATATCACTTTCCGTGTATGCAGGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTATGTGGAAGACTGTTTTTCAAGTAGGCCAAGTTGCCTCTTGGCACCAGCTAGTGTTCAAACTACAAGCACAAGCTCTAAACCTTCAAGCACAATGAAAAGACCCCAGCAAAATCAATCTCCTTTGCAAAATTTTGCAGTGCCTGGGAAGGCCAGAAGCAAGAGGAAAAGGCTTTCAGCCCCTAGAACCAAAAGCACTTGGTCACACCATTTAAGCCCAAAAAGTGATAATGGATTGAGTTCAGACCCTCTTTTACTTAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTCCCTAAAAAGAAGGATAAGCATGAAGGGGTAACTAAAGTTGGAGAAGTGGAAAAGGAGGGGATTGAGAAGGAGAGCTTGGGGGATTCTTCTGAGCTTGATGTTAACAATAATGGGCAGCATCAAATTCCAAGGAAATGCACCCATTGTTTGGCTCAGAAGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGCTGTTCTATGA 705 0.4397 MFAGIYHFPCMQEVDFGMEWLSVYVEDCFSSRPSCLLAPASVQTTSTSSKPSSTMKRPQQNQSPLQNFAVPGKARSKRKRLSAPRTKSTWSHHLSPKSDNGLSSDPLLLKQAYWLADSELIVPKKKDKHEGVTKVGEVEKEGIEKESLGDSSELDVNNNGQHQIPRKCTHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1366g00009 234 Gene3D - 158 228 IPR013088 GO:0006355|GO:0008270
Gabi1366g00009 234 PANTHER GATA TRANSCRIPTION FACTOR 12 232 - -
Gabi1366g00009 234 ProSitePatterns GATA-type zinc finger domain. 168 193 IPR000679 GO:0006355|GO:0043565
Gabi1366g00009 234 MobiDBLite consensus disorder prediction 87 101 - -
Gabi1366g00009 234 ProSiteProfiles GATA-type zinc finger domain profile. 162 198 IPR000679 GO:0006355|GO:0043565
Gabi1366g00009 234 SMART GATA_3 162 216 IPR000679 GO:0006355|GO:0043565
Gabi1366g00009 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 164 226 - -
Gabi1366g00009 234 FunFam GATA transcription factor 157 233 - -
Gabi1366g00009 234 CDD ZnF_GATA 167 214 IPR000679 GO:0006355|GO:0043565
Gabi1366g00009 234 MobiDBLite consensus disorder prediction 44 101 - -
Gabi1366g00009 234 MobiDBLite consensus disorder prediction 44 69 - -
Gabi1366g00009 234 Pfam GATA zinc finger 168 202 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1366g00009 Gabi-Chr1366 117817 119108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1366g00009 18 230 C2C2-Gata Transcription Factor Family AT4G32890 43.439 4.37e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1366g00009 GATA 1.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1366g00009 - - pvu:PHAVU_004G079200g 328.176