Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi1366g00008 | ATGGATGTTTGCCGGAATATATCACTTTCCGGTGAGTGTAAGCAAGAGCTTTCTACCCTTGATGACCTTTTCTCTGCTCAGAACACATGTATGCAGGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTATGTGGAAGACTGTTTTTCAAGTAGGCCAAGTTGCCTCTTGGCACCAGCTAGTGTTCAAACTACAAGCACAAGCTCTAAACCTTCAAGCACAATGAAAAGACCCCAGCAAAATCAATCTCCTTTGCAAAATTTTGCAGTGCCTGGGAAGGCCAGAAGCAAGAGGAAAAGGCTTTCAGCCCCTAGAACCAAAAGCACTTGGTCACACCATTTAAGCCCAAAAAGTGATAATGGATTGAGTTCAGACCCTCTTTTACTTAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTCCCTAAAAAGAAGGATAAGCATGAAGGGGTAACTAAAGTTGGAGAAGTGGAAAAGGAGGGGATTGAGAAGGAGAGCTTGGGGGATTCTTCTGAGCTTGATGTTAACAATAATGGGCAGCATCAAATTCCAAGGAAATGCACCCATTGTTTGGCTCAGAAGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGCTGTTCTATGA | 765 | 0.4405 | MDVCRNISLSGECKQELSTLDDLFSAQNTCMQEVDFGMEWLSVYVEDCFSSRPSCLLAPASVQTTSTSSKPSSTMKRPQQNQSPLQNFAVPGKARSKRKRLSAPRTKSTWSHHLSPKSDNGLSSDPLLLKQAYWLADSELIVPKKKDKHEGVTKVGEVEKEGIEKESLGDSSELDVNNNGQHQIPRKCTHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVL | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi1366g00008 | 254 | Gene3D | - | 178 | 248 | IPR013088 | GO:0006355|GO:0008270 | |
Gabi1366g00008 | 254 | ProSiteProfiles | GATA-type zinc finger domain profile. | 182 | 218 | IPR000679 | GO:0006355|GO:0043565 | |
Gabi1366g00008 | 254 | FunFam | GATA transcription factor | 177 | 253 | - | - | |
Gabi1366g00008 | 254 | MobiDBLite | consensus disorder prediction | 107 | 122 | - | - | |
Gabi1366g00008 | 254 | Pfam | GATA zinc finger | 188 | 222 | IPR000679 | GO:0006355|GO:0043565 | |
Gabi1366g00008 | 254 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 184 | 246 | - | - | |
Gabi1366g00008 | 254 | SMART | GATA_3 | 182 | 236 | IPR000679 | GO:0006355|GO:0043565 | |
Gabi1366g00008 | 254 | MobiDBLite | consensus disorder prediction | 64 | 122 | - | - | |
Gabi1366g00008 | 254 | ProSitePatterns | GATA-type zinc finger domain. | 188 | 213 | IPR000679 | GO:0006355|GO:0043565 | |
Gabi1366g00008 | 254 | PANTHER | GATA TRANSCRIPTION FACTOR | 21 | 252 | - | - | |
Gabi1366g00008 | 254 | CDD | ZnF_GATA | 187 | 234 | IPR000679 | GO:0006355|GO:0043565 | |
Gabi1366g00008 | 254 | MobiDBLite | consensus disorder prediction | 64 | 89 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi1366g00008 | Gabi-Chr1366 | 117817 | 119110 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi1366g00008 | 38 | 250 | C2C2-Gata Transcription Factor Family | AT4G32890 | 43.439 | 4.84e-43 | 146 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Gabi1366g00008 | GATA | 1.9e-15 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi1366g00008 | - | - | pvu:PHAVU_004G079200g | 355.14 |