Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1366g00008 ATGGATGTTTGCCGGAATATATCACTTTCCGGTGAGTGTAAGCAAGAGCTTTCTACCCTTGATGACCTTTTCTCTGCTCAGAACACATGTATGCAGGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTATGTGGAAGACTGTTTTTCAAGTAGGCCAAGTTGCCTCTTGGCACCAGCTAGTGTTCAAACTACAAGCACAAGCTCTAAACCTTCAAGCACAATGAAAAGACCCCAGCAAAATCAATCTCCTTTGCAAAATTTTGCAGTGCCTGGGAAGGCCAGAAGCAAGAGGAAAAGGCTTTCAGCCCCTAGAACCAAAAGCACTTGGTCACACCATTTAAGCCCAAAAAGTGATAATGGATTGAGTTCAGACCCTCTTTTACTTAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTCCCTAAAAAGAAGGATAAGCATGAAGGGGTAACTAAAGTTGGAGAAGTGGAAAAGGAGGGGATTGAGAAGGAGAGCTTGGGGGATTCTTCTGAGCTTGATGTTAACAATAATGGGCAGCATCAAATTCCAAGGAAATGCACCCATTGTTTGGCTCAGAAGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTTAGCTACTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGCTGTTCTATGA 765 0.4405 MDVCRNISLSGECKQELSTLDDLFSAQNTCMQEVDFGMEWLSVYVEDCFSSRPSCLLAPASVQTTSTSSKPSSTMKRPQQNQSPLQNFAVPGKARSKRKRLSAPRTKSTWSHHLSPKSDNGLSSDPLLLKQAYWLADSELIVPKKKDKHEGVTKVGEVEKEGIEKESLGDSSELDVNNNGQHQIPRKCTHCLAQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1366g00008 254 Gene3D - 178 248 IPR013088 GO:0006355|GO:0008270
Gabi1366g00008 254 ProSiteProfiles GATA-type zinc finger domain profile. 182 218 IPR000679 GO:0006355|GO:0043565
Gabi1366g00008 254 FunFam GATA transcription factor 177 253 - -
Gabi1366g00008 254 MobiDBLite consensus disorder prediction 107 122 - -
Gabi1366g00008 254 Pfam GATA zinc finger 188 222 IPR000679 GO:0006355|GO:0043565
Gabi1366g00008 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 246 - -
Gabi1366g00008 254 SMART GATA_3 182 236 IPR000679 GO:0006355|GO:0043565
Gabi1366g00008 254 MobiDBLite consensus disorder prediction 64 122 - -
Gabi1366g00008 254 ProSitePatterns GATA-type zinc finger domain. 188 213 IPR000679 GO:0006355|GO:0043565
Gabi1366g00008 254 PANTHER GATA TRANSCRIPTION FACTOR 21 252 - -
Gabi1366g00008 254 CDD ZnF_GATA 187 234 IPR000679 GO:0006355|GO:0043565
Gabi1366g00008 254 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1366g00008 Gabi-Chr1366 117817 119110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1366g00008 38 250 C2C2-Gata Transcription Factor Family AT4G32890 43.439 4.84e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1366g00008 GATA 1.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1366g00008 - - pvu:PHAVU_004G079200g 355.14