Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1364g00004 ATGGTGGAGATATTGGATAATCTTCTTTTAAGTCAGGTTGTGGCATATGTTCTGTGTTTGTACCTGCTTGTCAGATCAGATTCTGCAAGTGAAGGATTTGAGAGTATAGCATGCTGTGCTGATTCAAACTATACAGATACCCTGACCACATTAAATTACATATCAGATTACCGTTGGTTCTCTGACAAAACAAGTTGCAGACCAATAACCAGTGTGGTAAACCAATCAAGCTATGAAATATTACGAGTGTTTGACATAAACAAGGGAAAGAGATGTTACAATTTACCGGCATTAAAGGATCAAGTACATCTGATAAGGGGTACATTCCCATTTGACAATTCACTAAGGAAACCTCCAAATTCTTCCTTTGATGTTTCAATAGGGGTAACAAAAATAGGTGCGGTGAGGTCATCCCAAGACTTGAAAATTGAAGGAGTTTTCAGAGCCACCAAAAACTACGTAGACTTCTGCTTACTGACAGAGGAGGGTAATCCCTATATCTCTCTGCTTGAATTAAGGCCACTGCCTGAAGAGTATCTACAGGGTTTTTCATCTAGTGTTTTAAAACTGATTAGCAGAAGTAATCTTGGGGGCAAGGAAGATGACATCAGGTACCCAATTGACCGAAGTGATAGAATCTGGAAAGAAATTTCAAGTCCATCAGCTCTCACCTTCTCATCATTCAATAACAGCATTTCTTACCCCAATGCTAATGCAACACCTCCTCTACAAGTCTTACAAACAGCTCTTACCCACCCTGAGAGATTGGAATTCATCCACAATGGTCTTGAGAATGAGGATTATGAATACCGCATGTTTCTCTACTTCCTTGAATTAAATAGCACTGTTAGAGCAGGCCAAAGGGTGTTTGACATATATGTTAACAATGATATTAAGAAGGAGGGATTTGATATATTGGGAGAAGGATCCAAATATAGATACACTGTCTTGAACGTTTCAGCAAATGGATCACTTAATCTAACCTTGGCCAAGGCATCTGGGTCTGAGTCTGGACCCTTTTGTAATGCTTATGAGATCCTGCAGGTTCGACCACAGACAGAAAACACCAACCAAACAGACTTGGAAGCAATTGTGGGGGTAAGAGAAGAATTATTGGTTCAAAACCAAGACAATAAAGTGCTAGAGAGTTGGACTGGAGACCCTTGTATTCTTTTCCCATGGCAAGGAATATCATGTGATAGTCCAAATGGTCCACCTCTTATTACTAAGCTGGATCTTTCCTCGAGTAATCTCAAAGGAGCGCTTCCTTCCAGCGCAATTGAGTTGACCAACTTACAAATATTGAACCTGAGCCACAACAGCTTCAACGGTTATGTCCCCTCATTTCCACGTACCTCAATGCTGATATCAGTAGATCTGAGCTACAATGATCTTGAGGGATCGCTTCCTGAATCGTTTACTTTACTGCCACATTTAAAGTCATTATATTTTGGCTGCAATGAACGCATGAGCACAGAAGTTGCAGCAAACTCGAACAATTCAATCAATACAGATTATGGAAGGTGCAAGGCACAAGAACCCTTTCCAGATCAAGTAATGGTTATTACCGCTGTTGCATGTGGATCACTCTTGATTACATTGGCTGTTGGAATTCTTTTCGTTTGTCGTTATAGACAAAAATTAATTCAATTGGAAGGAGTTGATGGAAAAAGCAACACAACGGCAACAAATGTAATTATCTCTTTGCTCAGCATAGATGATTTCTTCATTAAGTCAGTGTCAATTCAAGCATTCACTTTGGAATATATAGAGGCGGCAACCGAAAAATACAAAACTTTGATAGGGGAAGGAGGGTTTGGCTGTGTGTACCGCGGCACTCTAGAAGATGGTCAACAAGTGGCAGTGAAAGTCCGGTCAGCCACATCAACCCAGGGAACTCGAGAATTTGATAATGAGCTAAACCTGCTTTCTGCAGTACGACATGAGAACCTGGTGCCTCTTCTTGGTTATTCTAATGAAAAAGATCAACAAATTATCGTGTATCCTTTTATGTCCAATGGCTCTCTGCAAGATAGACTATATGGGGAACCAGGAAAAAGAAAAATATTAGACTGGACAACCAGACTATCTATTGCACTTGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTTCTGTAATCCATAGGGATGTGAAATCAAGCAACATACTTTTGGATCATAGCATGTGTGCTAAGGTTGCAGATTTTGGTTTCTCTAAGTATGCTCCACAGGAAGGAGAGAGCATTATTTCTCTTGAAGTAAGAGGAACCGCAGGATATCTCGACCCTGAGTACTACACAACCCAGCAATTATCTGCTAAGAGTGATGTTTTCAGCTTTGGTGTTGTTCTACTTGAAATTGTGAGTGGTCGGGAACCACTCAACATCCATAGGCCACGGAACGAATGCAGCTTGGTTGAATGGGCTAAACCATATATAAGGGCATCGCAGGTTGAGGAAATTGTGGATCCTGGCATCAAGGGAGGATACCATCCAGAGGCAATGTGGAGAGTGGTGGAAGTGGCACTGCAATGTGTTGAACCCTTCTCATCACATCGACCAAGCATGGATGACATTGTACGTGAGTTGGAGGATGCTCTAATAATAGAAAACAATGCATCAGAATACATGAAGTCCATAGAGAGCCATGGGGGATCCAATCGCAATTCCATTGTTATAGACAAAGGGGTGCTACCCTCAACTCGATCAACAGCAGAATCAACAATCACGACCAAAAGTTTGAACCAATAA 2763 0.4126 MVEILDNLLLSQVVAYVLCLYLLVRSDSASEGFESIACCADSNYTDTLTTLNYISDYRWFSDKTSCRPITSVVNQSSYEILRVFDINKGKRCYNLPALKDQVHLIRGTFPFDNSLRKPPNSSFDVSIGVTKIGAVRSSQDLKIEGVFRATKNYVDFCLLTEEGNPYISLLELRPLPEEYLQGFSSSVLKLISRSNLGGKEDDIRYPIDRSDRIWKEISSPSALTFSSFNNSISYPNANATPPLQVLQTALTHPERLEFIHNGLENEDYEYRMFLYFLELNSTVRAGQRVFDIYVNNDIKKEGFDILGEGSKYRYTVLNVSANGSLNLTLAKASGSESGPFCNAYEILQVRPQTENTNQTDLEAIVGVREELLVQNQDNKVLESWTGDPCILFPWQGISCDSPNGPPLITKLDLSSSNLKGALPSSAIELTNLQILNLSHNSFNGYVPSFPRTSMLISVDLSYNDLEGSLPESFTLLPHLKSLYFGCNERMSTEVAANSNNSINTDYGRCKAQEPFPDQVMVITAVACGSLLITLAVGILFVCRYRQKLIQLEGVDGKSNTTATNVIISLLSIDDFFIKSVSIQAFTLEYIEAATEKYKTLIGEGGFGCVYRGTLEDGQQVAVKVRSATSTQGTREFDNELNLLSAVRHENLVPLLGYSNEKDQQIIVYPFMSNGSLQDRLYGEPGKRKILDWTTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGESIISLEVRGTAGYLDPEYYTTQQLSAKSDVFSFGVVLLEIVSGREPLNIHRPRNECSLVEWAKPYIRASQVEEIVDPGIKGGYHPEAMWRVVEVALQCVEPFSSHRPSMDDIVRELEDALIIENNASEYMKSIESHGGSNRNSIVIDKGVLPSTRSTAESTITTKSLNQ 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1364g00004 920 Gene3D - 189 350 - -
Gabi1364g00004 920 Gene3D Phosphorylase Kinase; domain 1 571 670 - -
Gabi1364g00004 920 SMART serkin_6 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1364g00004 920 SUPERFAMILY Protein kinase-like (PK-like) 575 867 IPR011009 -
Gabi1364g00004 920 Gene3D Transferase(Phosphotransferase) domain 1 671 888 - -
Gabi1364g00004 920 PANTHER OS07G0107800 PROTEIN-RELATED 35 874 - -
Gabi1364g00004 920 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 671 887 - -
Gabi1364g00004 920 Gene3D Ribonuclease Inhibitor 360 520 IPR032675 -
Gabi1364g00004 920 CDD STKc_IRAK 601 868 - -
Gabi1364g00004 920 SUPERFAMILY L domain-like 379 490 - -
Gabi1364g00004 920 Pfam Malectin-like domain 40 349 IPR024788 -
Gabi1364g00004 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Gabi1364g00004 920 Pfam Protein tyrosine and serine/threonine kinase 598 867 IPR001245 GO:0004672|GO:0006468
Gabi1364g00004 920 FunFam Leucine-rich repeat receptor-like kinase 361 506 - -
Gabi1364g00004 920 FunFam Nodulation receptor kinase 559 670 - -
Gabi1364g00004 920 ProSiteProfiles Protein kinase domain profile. 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1364g00004 920 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1364g00004 Gabi-Chr1364 48425 63577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1364g00004 8 874 Receptor kinase-like Gene Family AT1G67720 33.445 3.25e-136 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi1364g00004 Malectin_like 1e-49 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1364g00004 - - gmx:100781986 1322.38