Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1363g00020 ATGGCCAATTTGCAAACAGCGCCCACTGAGGTGGTTCCAGATGAATTTCCAGCGGGTCTAAGGGTTCTTGTGGTTGATCATGACATCACTGTGCTCAAAGCCACCGAGCAAATGTCTGCTCGATGCCGTTATCACGTTACCACATGTTCTACGGCTCTAGCGGCTTTGGAGATTCTGCTGGAGAGAAAAGATTGTTTTGATATGATACTCATTGATGATAATATGCCAGACATGGATGGCTATAAATTCATTCGGCACATTCATAGCAAAACGATCAATATTCCTTTCGTTATGATGTCTGTCAGCGATGATCCAAGTGATGTCTTGAAGGCTATTGACAATGGTGCTTGTCATTATTTGACTAAACCATTACATGATGAAGAATTCAAAAATATATGGCAGCATGTGGTTAGAGAAGCCCGGATTGAAAATAAAAAAAATGACAAGTCAGTGAGCTTGGGAGAGGATGACCCAAAAAGACGGAGAAATGATGATGTTTTCGAATTTGCTTTGTCCGATGCTGATGCTGATGCAGATGCAGATGCAGATGCAGCACAAGCGGTTGTTCAAGCTCCACAGAAAAGCAGCAGCAGTTCACAAGAAACCAATGCTGTTGACTCTGGAGATATCGTTTATCCACCCCCGCCGGCAAAAAAGCAGCGTGTGGTATGGACAACAGAATTGCATAACGAATTCGTAAAAGCCGTGGATCAACTCGGAGTTGAAAAGGCTGTGCCAAAGAGAATTCTTGAATTGATGAATGTCCCCTATTTGACAAGAGAGAATATCGCTAGTCACTTGCAGAAATTTAGACAATATTTGAAGAGAGAGACAGAGCAACAGAATGAAATGCCAAACTCCGCCACTGGTACTACAGAAGGTGCACTTGGGGTATTTGACTTTCACGCTTTTGCTGGCTTGAATGTTTCCAGTGAAACCCAAGCAGGAGGCCTTCATAATGAGCTCATAGGTAAAATAATGCCTCAAGAGGACCAAGCTTCCCTACTGAAACCATTCATACAGTGGCCCAACCAATCTCATGCAGAACATGCTATGGTATGTGGTGGTCATCATCTAGCAAAATATCCTTCTAACATTTCCATGAATTCCCCTCAGTCATCCAGCATAGCTGTAGAAGATGCATCATTAGGATATGGAACATGGCGATCATCAGGCACATTTGATTCAGTGGGAGTTGGAAGGCTTGGTATTCAGAAAAATAATGAACTGATAGATATACTGCAGCTTAACCAGAAAAAGCTCGAGTATCAACAAAAAGAACAGCAACTGCAGCAGCAGCAGCAGCAGTCACTTATGCTCGATCAGATTCAGCCATCTCGCTCGGTGATTCCATGTACTGCTTTACAGGAGGAAAATAACGTTGCTTCTGTCAACCAGAATGTCAGCTTTGGCAGGAATTCTCTTACAGCTGATTATAATATTTTAGCACCTCAAACAAATAATTCACTAAATATTGCTCAATTACCTGGTGAGAACGCCAATGCTAGAGGAATACTCTCTTATCCAAGTCTTTCACCGGTGTCTGATACACAAGTTCCTGATGGTTCTATATCAGGTGATTCACTTTATCAAGCGTCTTTTAACAATCTTTGA 1614 0.4226 MANLQTAPTEVVPDEFPAGLRVLVVDHDITVLKATEQMSARCRYHVTTCSTALAALEILLERKDCFDMILIDDNMPDMDGYKFIRHIHSKTINIPFVMMSVSDDPSDVLKAIDNGACHYLTKPLHDEEFKNIWQHVVREARIENKKNDKSVSLGEDDPKRRRNDDVFEFALSDADADADADADAAQAVVQAPQKSSSSSQETNAVDSGDIVYPPPPAKKQRVVWTTELHNEFVKAVDQLGVEKAVPKRILELMNVPYLTRENIASHLQKFRQYLKRETEQQNEMPNSATGTTEGALGVFDFHAFAGLNVSSETQAGGLHNELIGKIMPQEDQASLLKPFIQWPNQSHAEHAMVCGGHHLAKYPSNISMNSPQSSSIAVEDASLGYGTWRSSGTFDSVGVGRLGIQKNNELIDILQLNQKKLEYQQKEQQLQQQQQQSLMLDQIQPSRSVIPCTALQEENNVASVNQNVSFGRNSLTADYNILAPQTNNSLNIAQLPGENANARGILSYPSLSPVSDTQVPDGSISGDSLYQASFNNL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1363g00020 537 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 369 IPR045279 GO:0009736
Gabi1363g00020 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 275 IPR017930 -
Gabi1363g00020 537 SUPERFAMILY CheY-like 19 145 IPR011006 -
Gabi1363g00020 537 CDD REC_typeB_ARR-like 22 137 - -
Gabi1363g00020 537 SUPERFAMILY Homeodomain-like 217 276 IPR009057 -
Gabi1363g00020 537 SMART REC_2 20 133 IPR001789 GO:0000160
Gabi1363g00020 537 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Gabi1363g00020 537 Gene3D - 217 277 - -
Gabi1363g00020 537 MobiDBLite consensus disorder prediction 181 212 - -
Gabi1363g00020 537 ProSiteProfiles Response regulatory domain profile. 21 137 IPR001789 GO:0000160
Gabi1363g00020 537 MobiDBLite consensus disorder prediction 189 206 - -
Gabi1363g00020 537 NCBIfam myb-like DNA-binding domain, SHAQKYF class 219 272 IPR006447 GO:0003677
Gabi1363g00020 537 Pfam Myb-like DNA-binding domain 221 269 IPR001005 -
Gabi1363g00020 537 Gene3D - 20 154 - -
Gabi1363g00020 537 FunFam Two-component response regulator 216 278 - -
Gabi1363g00020 537 Coils Coil 413 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1363g00020 Gabi-Chr1363 185276 187956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1363g00020 12 317 Response Regulator Gene Family AT4G31920 39.617 8.06e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi1363g00020 Response_reg 1.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1363g00020 - K14491 pcin:129311779 382.874