Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1363g00003 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCGTCGGGCTCCGTTTCAGCCTCTTCCTCTCGCTCCTCCTCTCCTTCCGATTCTCGCTCCTCTCGCTCTCCCTCTCGCTCCAGATCTTTCTCTTCCTCCTCGTCCTCTCCGTCGCGTAGTTCCCGGAGCCGGAGCCCTCCTCCTCAGAGGCGAAAAAGTCCTCCTGAAGCAGCTAGGCGAGGTCGATCTCCTCCAGCTCAGTCCAAGAGAACTTCTCCTCCTCCAAGGAAGCCTTCTCCTGTACGTGAATCACTTGTTCTTCACATAGAGAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTCGGTGAGGTTGTTAGTGTTGAGTTGGCAATGGATCGAAATGTTAATCTTCCAAAAGGATATGGATATGTGCAATTCAAGACAAGAGGGGACGCTGAAAAAGCACTTCTGTTCATGGATGGTGCCCAAATAGATGGCAATGTCATTAAGGCAAGATTTACCCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGATGCCCCTAGGACTGATAATGCTAGTGCAGATGTTGAAAAGGATGGGCCAAAACGGCAGAGAGAACCTTCTCCTCGGAGAAAACCTCCTCCTTCACCACGGAGGAGATCTCCTCTGCCTCGAAGAGTTGGATCTCCAAGACGACCAGATTCTCCTCGCCGCCGTGCTGATTCTCCTGTCCGTCGTCGATTAGACTCTCCTCCTCGTCGTGGTGACACACCACCTAGGAGGAGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGTTGCGTGGAAGCCCAGGCCGGAGACGTTCTCCTCCTCCTCCTCCTCGGCGCCGTTCACCCCCACTCAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCAATCAGTCGCAGACGCAGTCGCTCTCCAATTCGTAGGTCTGCACGCTCACGTTCAAGATCATTCTCACCTCGGAGAGGTCGACCCCCTGTGAGACGCGGGAGGTCCTCGTCCTACTCTGGTTCACCTAGTCCCCGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGTATTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCAGCTCGCAAACCATAG 1227 0.5403 MAKPGRGRRSPSGSVSASSSRSSSPSDSRSSRSPSRSRSFSSSSSSPSRSSRSRSPPPQRRKSPPEAARRGRSPPAQSKRTSPPPRKPSPVRESLVLHIEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRNVNLPKGYGYVQFKTRGDAEKALLFMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDAPRTDNASADVEKDGPKRQREPSPRRKPPPSPRRRSPLPRRVGSPRRPDSPRRRADSPVRRRLDSPPRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRLRGSPGRRRSPPPPPRRRSPPLRRARSPPRRSPISRRRSRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSGSPSPRKVSRRSKSRSPRRPLRGRGISNSSSSSSPPPARKP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1363g00003 408 SMART rrm1_1 96 169 IPR000504 GO:0003723
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 390 408 - -
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 237 270 - -
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 195 220 - -
Gabi1363g00003 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 167 IPR000504 GO:0003723
Gabi1363g00003 408 CDD RRM_RNPS1 97 169 IPR034201 -
Gabi1363g00003 408 SUPERFAMILY RNA-binding domain, RBD 38 170 IPR035979 GO:0003676
Gabi1363g00003 408 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 7 261 - -
Gabi1363g00003 408 Gene3D - 5 179 IPR012677 -
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 172 408 - -
Gabi1363g00003 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 11 54 - -
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 288 359 - -
Gabi1363g00003 408 MobiDBLite consensus disorder prediction 1 92 - -
Gabi1363g00003 408 FunFam Serine/arginine-rich splicing factor SR45 3 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1363g00003 Gabi-Chr1363 14780 20532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1363g00003 97 170 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 8.36e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1363g00003 K14325 - gmx:100783566 281.182