Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1361g00010 ATGAGCTCCAATTCTAAAGAGAATGAGCTTCCCACGGAGGTAGCAAAGGTTGATGATGCTTACGTCTCTGCTTTGTTACTATGTTTTAGTAGGATCTTTCCTGCAATCCTAAATGCTGCTGTTGATCTCAACTTGTTTGATATCATAGCTAAGAAACAGAGTTCATGTGGTTCAAGCTTGTCTGCTTCTGAGATTGCTTCTCTGCTTCCAAATTATGAACACCCAGAATTGGCTAACAGGCTTGAACGCATGTTAACTGTGCTAGCTAGTTATTCTCTTCTGAATTGCTCCATTCGCACCAACGAAGATGGTAAGAGAGAAAGAGTTTATGCTCTCTCACCCGTTGGTGAATACTTTGCTTCTGATAATGATGGAAGCTCTTTGGGTCCATTCTCAACTCTAGTGCATAGAGCATATCATGACATTTGGAAGGATGTGAAGGATGCAATTGTGGACCCTAACAACAATAACCATTTCCAAAAAGTTTATGGAATGCCCTCTTATCAATATATGGAGACAGATAAAGAGCTGAATCACATTTTCAACAAGGCAATGGCCCATGCTGGTCCATTAGAAATTAAAAGGAGCCTTGGACTATATAAAGGATTTGAGGGAATATCAACACTTGTTGATGTAGGAGGTGGAGTAGGACAAGCCTTAAAACAGATTATCTCCAAGCATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGGTTCAAGATGCACCACCTCTTCCAGGGATAGAACATGTTGGAGGAGATATGTTTGAAAGTGTTCCAAAAGGAGATGCCATTTTGCTCAAGCATGTATGTCATAATTGGTCAGACGAAGAATGTGTAAAGTTTTTGAGAAATTGTCACAAAGCTTTGCCAGAGCATGGAAAGGTGATTGTTTTGGACTTTATAATTCCAGAAGTCCCGGATTCAAGCGGAATATCTAAGCATACTTGTGTTATCGACAATCTCATGTTTATAGTAACTGGTGGAAAGGAAAGAACTGAGAAAGAATTTGAGAGTTTATGTAGGAATTCTGGATTTGCAAGATTTCATGTTGCTTGCACTGATGTCTCAGGAGCGATGGAATTTTATAAATAA 1101 0.3906 MSSNSKENELPTEVAKVDDAYVSALLLCFSRIFPAILNAAVDLNLFDIIAKKQSSCGSSLSASEIASLLPNYEHPELANRLERMLTVLASYSLLNCSIRTNEDGKRERVYALSPVGEYFASDNDGSSLGPFSTLVHRAYHDIWKDVKDAIVDPNNNNHFQKVYGMPSYQYMETDKELNHIFNKAMAHAGPLEIKRSLGLYKGFEGISTLVDVGGGVGQALKQIISKHPSIKGINFDLPQVVQDAPPLPGIEHVGGDMFESVPKGDAILLKHVCHNWSDEECVKFLRNCHKALPEHGKVIVLDFIIPEVPDSSGISKHTCVIDNLMFIVTGGKERTEKEFESLCRNSGFARFHVACTDVSGAMEFYK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1361g00010 366 Gene3D - 1 119 IPR036388 -
Gabi1361g00010 366 FunFam Uncharacterized protein 120 366 - -
Gabi1361g00010 366 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Gabi1361g00010 366 Gene3D Vaccinia Virus protein VP39 121 366 IPR029063 -
Gabi1361g00010 366 Pfam Dimerisation domain 36 89 IPR012967 GO:0046983
Gabi1361g00010 366 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 356 IPR029063 -
Gabi1361g00010 366 Pfam O-methyltransferase domain 143 348 IPR001077 GO:0008171
Gabi1361g00010 366 CDD AdoMet_MTases 208 305 - -
Gabi1361g00010 366 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Gabi1361g00010 366 FunFam Caffeic acid 3-O-methyltransferase 2 119 - -
Gabi1361g00010 366 PANTHER O-METHYLTRANSFERASE 30 364 IPR016461 GO:0008168
Gabi1361g00010 366 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 366 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1361g00010 Gabi-Chr1361 207240 209206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1361g00010 1 355 Monolignol Biosynthesis Gene Families AT5G54160 46.779 9.39e-110 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1361g00010 - - aprc:113869089 570.081