Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1361g00006 ATGAGTTCCAATTCCAAAGAGAATGAGCTTCCCAGAGAGATAGCAAAGGTTGATGATGCTTACCTTTCTGCTTTGTTACTATGTTTTAGTAGGATCTTTCCTGCAATCCTAAATGCTGCTATTGATCTCAACTTGTTTGACATCATAGCTAAGAAACAGAGTTCATGTGGTTCAAGCTTGTCTGCTTCTGAGATTGCTTCTCTGCTTCCAAATTATGAACACCCAGAATTGGCTAACAGGCTTGAACGCATGTTAACTGTGCTAGCTAGTTATTCTCTTCTGAATTGCTCCATTCGCACCAATGAAGATGGTAACAGAGAAAGAGTTTATGCTCTTTCACCCATTGGTGAATACTTTGCTTCTGATAACGATGGAGGCTCTTTGGGTCCACTCTCAACTTTAGTGCATCGAGCATATCATGACATTTGGAAGGACGTGAAGGATGCAATTGTGGATCCTAATAACAATAACCATTTCGAAAAAGTTTATGGAATGCCCTCTTATCAATATATGAAGACGGATAAAGAGCTGAATCACATTTTTAATAAAGCAATGGCCCATTCTGGTCCGTTAGAAATGAAAAGGATCCTTGAACTATATAAAGGATTTGAGGGAATATCAACACTTGTTGATGTAGGAGGTGGAGAAGGGCAGGCCTTAAAACAAATTATATCCAAGTATCCTTCAATAAAAGGAATTAATTATGATTTGCCTCAAGTGGTTCAAGATGCACCACCTCTTCCAGGCATAGAGCATGTTGGAGGAGATATGTTCGAAAGTGTTCCCAAAGGTGATGCCATCTTGCTAAAGCTTGTATGTCATAATTGGTCAGATGAAGAATGTGTGAAGTTTTTAAGAAATTGTCACAAAGCTTTGCTAGAGCATGGAAAGGTGATTGTTTTGGACTATATAATTCCAGAAGTCCCGGATTCAAGCAGAATATCTAAGCATACTTGTGCTATTGACAATCTCATGTTTATAGCAACTGGTGGAAAGGAAAGAACTGAGAAAGAATTTGAGAGTATATGTAGGAATTCTGGATTTTCCAGATTTCATGTTGCTTGCACTGATGTCTCAGCTATGTCAGGAGTGATGGAATTTTATAAATAA 1110 0.3829 MSSNSKENELPREIAKVDDAYLSALLLCFSRIFPAILNAAIDLNLFDIIAKKQSSCGSSLSASEIASLLPNYEHPELANRLERMLTVLASYSLLNCSIRTNEDGNRERVYALSPIGEYFASDNDGGSLGPLSTLVHRAYHDIWKDVKDAIVDPNNNNHFEKVYGMPSYQYMKTDKELNHIFNKAMAHSGPLEMKRILELYKGFEGISTLVDVGGGEGQALKQIISKYPSIKGINYDLPQVVQDAPPLPGIEHVGGDMFESVPKGDAILLKLVCHNWSDEECVKFLRNCHKALLEHGKVIVLDYIIPEVPDSSRISKHTCAIDNLMFIATGGKERTEKEFESICRNSGFSRFHVACTDVSAMSGVMEFYK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1361g00006 369 Gene3D Vaccinia Virus protein VP39 124 369 IPR029063 -
Gabi1361g00006 369 Pfam Dimerisation domain 36 89 IPR012967 GO:0046983
Gabi1361g00006 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171
Gabi1361g00006 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 358 IPR029063 -
Gabi1361g00006 369 PIRSF O-mtase 1 369 IPR016461 GO:0008168
Gabi1361g00006 369 CDD AdoMet_MTases 208 305 - -
Gabi1361g00006 369 FunFam Caffeic acid 3-O-methyltransferase 2 119 - -
Gabi1361g00006 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 369 IPR016461 GO:0008168
Gabi1361g00006 369 Gene3D - 1 119 IPR036388 -
Gabi1361g00006 369 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Gabi1361g00006 369 PANTHER O-METHYLTRANSFERASE 30 357 IPR016461 GO:0008168
Gabi1361g00006 369 FunFam Uncharacterized protein 120 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1361g00006 Gabi-Chr1361 164277 166268 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1361g00006 1 355 Monolignol Biosynthesis Gene Families AT5G54160 47.059 9.93e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1361g00006 - - aprc:113869089 578.17