Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1361g00005 ATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAACTGCAATTCCACCTCTGTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGGGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGGGGGAGATGGATACTGATGAGGGTGATAGTTCTGAAGAAAGTGATGACGAGGCTCAGAAGAAAATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAACTGCAATTCCACCTCTGTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGGGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGGGGGAGATGGATACTGATGAGGGTGATAGTTCTGAAGAAAGTGATGACGAGGCTCAGAAGAAAATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAATTCCACCTCTCTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGAGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGAATGCTACATCAAATGCTTATAAACCTGATTTAAAAACTGTTGAAAAGGATACTTCTAGTGATAGTTCAGAAGACGATGATATTGGAAAGTCACCACATATGGTTGAAAAACCTGTGAAAGGTTCAGATAGTTCAAAGGACAATGAGGAAGAAATTGAGGAAAAAGCCTCCAAAACTGCTCAGCTTAAAACCCCAGCTACACAGAAAGAAAAAAATGCTGCATCGAAGACAATATATGTTCGAAACTTGTCATACAGTGTGGAACGGTCTGATATGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTTCATACAGATAACGAAGGGAGGTTTAAAGGTTTTGGACATGTTGAGTTTGCAATAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACAGAATTGTTGAGACGTCCCATCAAAGTTGGTATAGCTTGGGAAAGGGGTCTCGATAGAAGCAACTTGAGCAACTCATTCCAGAAAGGTGAAACAGTTCAATCTCAAACTGTATTTGTAAAGGGTTTTGATAGATCCCTTGGAGAAGAGAAGATAAAAGCTAGCCTGGAGGAGCATTTCGGTTCTTGTGGAGAGATAACAAGGATATCAATTCCGAAATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGACTTCAAGGATGTTGATAGCTTGAAGAATGCTCTACAACTGCATCGAACTGAGTTTGGAGGTTATCCTTTGTTAGTTCAAAAAGCAAAGCCTCGATATTATAATCAGGATATAGGCCATGGTAGAGGTGTTGGTGGTCATCAGTTTGACGGAAGGGATGGAGTTGGCCATGGTGGCACAGTGGGTTGGAGGAAAAGTAGTGGCGGTCATCAATTTTGTGGAAGGGATGGAAGTGACCATGGTGACAGAGTGAATTGGGGGAGAAGTGGTGGCGGTCATGAGTTTGGTGTAAGGGATGGAGATGGCCATAGTGGCAGAGTCGGTTGGGGGAGAAGCAGCGGTGGTCATAAGTTTTGTGGAAGGGATGGAGGTGACCCTGGTGGCAGAGTGGATTGGGGGAGAAGTGGTGGTGATCATCAGTTTGATGCAAGGAATGGTAGTGACCATGGTGGCACAGTGGGTTGGCGAAGTAGTAGGGGTGGTCATCAGTTTTGTGGAAGGGATGGAGGTAACAATAGTGGCAAAGTGGGTTGGGGGAGAATTAGTGGTGGTCATCAGTTTTGTGGAAGGGATGAAGGTGACCTTGGTTGCAGAATGGATTGGGGTAAAAGTGGTGGTGATCTTCAATATGGTGTGAGGGATGGAGGTGGCCATGGTGACACAGCGGGTTGGGGGAGTAGTAGCCATGGTGACACAGCGGGTTGGGGGAGTAGTAGCGGTGGTCATCATCAATTTTGTGGAAGGGATGGAGGTGGCCAAGATGGCAGAGTGGATTGGAGGAGAAATGGTGGTGGATGGAAGTATTGA 2217 0.4362 MTNESDTNDGATATATAIPPLSNEKRVCEDEDGNQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKGEMDTDEGDSSEESDDEAQKKMTNESDTNDGATATATAIPPLSNEKRVCEDEDGNQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKGEMDTDEGDSSEESDDEAQKKMTNESDTNDGATATAIPPLSNEKRVCEDEDENQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKNATSNAYKPDLKTVEKDTSSDSSEDDDIGKSPHMVEKPVKGSDSSKDNEEEIEEKASKTAQLKTPATQKEKNAASKTIYVRNLSYSVERSDMENLFKECGEIVDVRLHTDNEGRFKGFGHVEFAIAEAAQKALELDNTELLRRPIKVGIAWERGLDRSNLSNSFQKGETVQSQTVFVKGFDRSLGEEKIKASLEEHFGSCGEITRISIPKFHDSGAVKGFAHLDFKDVDSLKNALQLHRTEFGGYPLLVQKAKPRYYNQDIGHGRGVGGHQFDGRDGVGHGGTVGWRKSSGGHQFCGRDGSDHGDRVNWGRSGGGHEFGVRDGDGHSGRVGWGRSSGGHKFCGRDGGDPGGRVDWGRSGGDHQFDARNGSDHGGTVGWRSSRGGHQFCGRDGGNNSGKVGWGRISGGHQFCGRDEGDLGCRMDWGKSGGDLQYGVRDGGGHGDTAGWGSSSHGDTAGWGSSSGGHHQFCGRDGGGQDGRVDWRRNGGGWKY 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 234 255 - -
Gabi1361g00005 738 Gene3D - 289 412 IPR012677 -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 114 145 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 723 738 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 202 233 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 257 305 - -
Gabi1361g00005 738 Coils Coil 207 227 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 1 19 - -
Gabi1361g00005 738 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 494 IPR000504 GO:0003723
Gabi1361g00005 738 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 393 IPR000504 GO:0003723
Gabi1361g00005 738 SUPERFAMILY RNA-binding domain, RBD 313 403 IPR035979 GO:0003676
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 695 709 - -
Gabi1361g00005 738 SUPERFAMILY RNA-binding domain, RBD 412 529 IPR035979 GO:0003676
Gabi1361g00005 738 SMART rrm1_1 421 497 IPR000504 GO:0003723
Gabi1361g00005 738 SMART rrm1_1 324 395 IPR000504 GO:0003723
Gabi1361g00005 738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 501 IPR000504 GO:0003723
Gabi1361g00005 738 Gene3D - 413 529 IPR012677 -
Gabi1361g00005 738 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 455 576 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 24 55 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 94 109 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 689 738 - -
Gabi1361g00005 738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 399 IPR000504 GO:0003723
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 604 647 - -
Gabi1361g00005 738 MobiDBLite consensus disorder prediction 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1361g00005 Gabi-Chr1361 77476 87844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1361g00005 319 506 Eukaryotic Initiation Factors Gene Family AT3G16380 28.095 7.03e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1361g00005 K11294 - lang:109360902 407.142