Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1361g00004 ATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAACTGCAATTCCACCTCTGTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGGGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGGGGGAGATGGATACTGATGAGGGTGATAGTTCTGAAGAAAGTGATGACGAGGCTCAGAAGAAAATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAACTGCAATTCCACCTCTGTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGGGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGGGGGAGATGGATACTGATGAGGGTGATAGTTCTGAAGAAAGTGATGACGAGGCTCAGAAGAAAATGACCAATGAATCAGATACCAATGATGGTGCAACTGCAACTGCAATTCCACCTCTCTCAAACGAAAAAAGGGTGTGTGAGGATGAAGATGAGAACCAACTAAGATCAAAGAGGCAGAAGATAGATGAGATTGCTGAGGAGCCAAAGAATAAGGGGGAAATTATTTCAAATGATTCCTCTTCAGATTCTGAACAAAATAAGCCTGTGAAAGGTTCAGATAGTTCAAAGGACAATGAGGAAGAAATTGAGGAAAAAGCCTCCAAAACTGCTCAGCTTAAAACCCCAGCTACACAGAAAGAAAAAAATGCTGCATCGAAGACAATATATGTTCGAAACTTGTCATACAGTGTGGAACGGTCTGATATGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTTCATACAGATAACGAAGGGAGGTTTAAAGGTTTTGGACATGTTGAGTTTGCAATAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACAGAATTGTTGAGACGTCCCATCAAAGTTGGTATAGCTTGGGAAAGGGGTCTCGATAGAAGCAACTTGAGCAACTCATTCCAGAAAGGTGAAACAGTTCAATCTCAAACTGTATTTGTAAAGGGTTTTGATAGATCCCTTGGAGAAGAGAAGATAAAAGCTAGCCTGGAGGAGCATTTCGGTTCTTGTGGAGAGATAACAAGGATATCAATTCCGAAATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGACTTCAAGGATGTTGATAGCTTGAAGAATGCTCTACAACTGCATCGAACTGAGTTTGGAGGTTATCCTTTGTTAGTTCAAAAAGCAAAGCCTCGATATTATAATCAGGATATAGGCCATGGTAGAGGTGTTGGTGGTCATCAGTTTGACGGAAGGGATGGAGTTGGCCATGGTGGCACAGTGGGTTGGAGGAAAAGTAGTGGCGGTCATCAATTTTGTGGAAGGGATGGAAGTGACCATGGTGACAGAGTGAATTGGGGGAGAAGTGGTGGCGGTCATGAGTTTGGTGTAAGGGATGGAGATGGCCATAGTGGCAGAGTCGGTTGGGGGAGAAGCAGCGGTGGTCATAAGTTTTGTGGAAGGGATGGAGGTGACCCTGGTGGCAGAGTGGATTGGGGGAGAAGTGGTGGTGATCATCAGTTTGATGCAAGGAATGGTAGTGACCATGGTGGCACAGTGGGTTGGCGAAGTAGTAGGGGTGGTCATCAGTTTTGTGGAAGGGATGGAGGTAACAATAGTGGCAAAGTGGGTTGGGGGAGAATTAGTGGTGGTCATCAGTTTTGTGGAAGGGATGAAGGTGACCTTGGTTGCAGAATGGATTGGGGTAAAAGTGGTGGTGATCTTCAATATGGTGTGAGGGATGGAGGTGGCCATGGTGACACAGCGGGTTGGGGGAGTAGTAGCCATGGTGACACAGCGGGTTGGGGGAGTAGTAGCGGTGGTCATCATCAATTTTGTGGAAGGGATGGAGGTGGCCAAGATGGCAGAGTGGATTGGAGGAGAAATGGTGGTGGATGGAAGTATTGA 2106 0.4425 MTNESDTNDGATATATAIPPLSNEKRVCEDEDGNQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKGEMDTDEGDSSEESDDEAQKKMTNESDTNDGATATATAIPPLSNEKRVCEDEDGNQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKGEMDTDEGDSSEESDDEAQKKMTNESDTNDGATATAIPPLSNEKRVCEDEDENQLRSKRQKIDEIAEEPKNKGEIISNDSSSDSEQNKPVKGSDSSKDNEEEIEEKASKTAQLKTPATQKEKNAASKTIYVRNLSYSVERSDMENLFKECGEIVDVRLHTDNEGRFKGFGHVEFAIAEAAQKALELDNTELLRRPIKVGIAWERGLDRSNLSNSFQKGETVQSQTVFVKGFDRSLGEEKIKASLEEHFGSCGEITRISIPKFHDSGAVKGFAHLDFKDVDSLKNALQLHRTEFGGYPLLVQKAKPRYYNQDIGHGRGVGGHQFDGRDGVGHGGTVGWRKSSGGHQFCGRDGSDHGDRVNWGRSGGGHEFGVRDGDGHSGRVGWGRSSGGHKFCGRDGGDPGGRVDWGRSGGDHQFDARNGSDHGGTVGWRSSRGGHQFCGRDGGNNSGKVGWGRISGGHQFCGRDEGDLGCRMDWGKSGGDLQYGVRDGGGHGDTAGWGSSSHGDTAGWGSSSGGHHQFCGRDGGGQDGRVDWRRNGGGWKY 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1361g00004 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 362 IPR000504 GO:0003723
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 567 610 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 234 248 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 114 145 - -
Gabi1361g00004 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 383 464 IPR000504 GO:0003723
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 270 284 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 202 233 - -
Gabi1361g00004 701 SUPERFAMILY RNA-binding domain, RBD 375 492 IPR035979 GO:0003676
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 249 268 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 652 701 - -
Gabi1361g00004 701 Coils Coil 207 227 - -
Gabi1361g00004 701 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 418 539 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 1 19 - -
Gabi1361g00004 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 356 IPR000504 GO:0003723
Gabi1361g00004 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 385 457 IPR000504 GO:0003723
Gabi1361g00004 701 SMART rrm1_1 287 358 IPR000504 GO:0003723
Gabi1361g00004 701 SMART rrm1_1 384 460 IPR000504 GO:0003723
Gabi1361g00004 701 Gene3D - 376 492 IPR012677 -
Gabi1361g00004 701 SUPERFAMILY RNA-binding domain, RBD 276 366 IPR035979 GO:0003676
Gabi1361g00004 701 Gene3D - 251 375 IPR012677 -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 658 672 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 24 55 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 1 284 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 94 109 - -
Gabi1361g00004 701 MobiDBLite consensus disorder prediction 686 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1361g00004 Gabi-Chr1361 77476 87844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1361g00004 288 446 Eukaryotic Initiation Factors Gene Family AT4G34110 28.750 6.12e-11 63.9