Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1361g00002 ATGGCTAATGTGTCTGTTCCACTTCCCTCAAATAGTGCAACCCCTGAATGGATGGACAAAGCTGATAATGCATGGCAACTAGTAGCTGCAACACTAGTGGGGCTGCAAAGTGTTCCAGGGCTCATAATCTTGTATGGTGGAGCAGTTAAGAAGAAATGGGCTGTGAACTCAGCATTCATGGCACTCTATGCTTTTGCTTGTGTTTTTTTCTGTTGGGTTGTGTGGGGATATAGAATGTCTTTTGGTGATCACCTTCTTCCTTTCTTGGGAAAACCTGGTGCTGCACTGGATGAGGTTTATCTTTTCAAGCCAGCTTTTTCGGGGGCATTTCCCAATGCTACAATGGTGTATTTCCAGGGTGTTTTTGCTGCTATTACTTTGATTCTAATAGCTGGGGCTTTGTTGGGGCGTATGAACTTTTATGCTTGGATGTTATTTGTGCCTTTATGGCTCACATTCTCCTACACCTTCACAGCATTCAGCATATGGAGTCCTCAGGGCTTTCTCTCCAAAATGGGGTTAATTGATTACTCAGGTGGATATGTTATCCATTTGTCTTCAGGGGTTGCTGGATTCACAGCTGCATACTGGGTTGGACCCCGGCTAAACAAGGACAGGGAGAGGTTCCCTCCAAACAACATACTTCTAATGTTAGCAGGGGCAGGGCTGCTATGGATGGGTTGGACAGGTTTCAATGGAGGAGATCCATATGTAGTGAGCATGGATGCTTCTTTGGCTATCTTGAATACACATGCTTGCACTGCTACTAGCTTGCTTACTTGGGTCATCCTTGATGTCCTTTATTTCCGAAAGCCTTCTGTAATTGGAGCTGTTCAAGGCATGATTACTGGTTTGGTTTGCATAACCCCAGCTGCAGGGGTTGTGCAAGGATGGGCAGCACTTGTGATGGGGGTTTTGTCAGGCTTAATTCCATGGGTCACTATGATGGTAATCCATAAGAGATCAAAAATACTACAGAAGGTGGATGATACAATGGCAGTGTTTCACACTCATGCTGTTGCAGGAACCCTTGGAGGAATCCTCACTGGTCTCTTTGCAGAGCCAAGACTGAACATGTTGTTCTATGGAAACTATAATAAATACGTTGGACTATTTTATGGCATCCAAATGAACATGTTCGGTACTGGGTTGAGACAAATAGGAATCCAATTCCTTGGGATTTTGTTTGTTGTCATACTTAATGTTATAAGCACAAGTTTGATATGTCTCTTCATTGGATTTCTGGTTCCATTGAGAATGTCTGAAGAGGATATGGATATAGGTGATGAGGCTGCTCATGGAGAAGAAGCTTATGCAATCTGGGGCCAGGGTGATAAGCTTGAAAACTCAAGTTCAAAGTATGGAAGCTCAGTATATGATGATGTTGAATCTGGGGCCACCAATAAGAAGCGTGGTGGCCAGGTTGAGATGATATAG 1437 0.4384 MANVSVPLPSNSATPEWMDKADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMALYAFACVFFCWVVWGYRMSFGDHLLPFLGKPGAALDEVYLFKPAFSGAFPNATMVYFQGVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPQGFLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVVSMDASLAILNTHACTATSLLTWVILDVLYFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALVMGVLSGLIPWVTMMVIHKRSKILQKVDDTMAVFHTHAVAGTLGGILTGLFAEPRLNMLFYGNYNKYVGLFYGIQMNMFGTGLRQIGIQFLGILFVVILNVISTSLICLFIGFLVPLRMSEEDMDIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSVYDDVESGATNKKRGGQVEMI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1361g00002 478 PANTHER AMMONIUM TRANSPORTER MEP2 11 450 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi1361g00002 478 SUPERFAMILY Ammonium transporter 17 420 - -
Gabi1361g00002 478 NCBIfam ammonium transporter 22 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi1361g00002 478 Pfam Ammonium Transporter Family 24 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi1361g00002 478 MobiDBLite consensus disorder prediction 452 478 - -
Gabi1361g00002 478 ProSitePatterns Ammonium transporters signature. 176 201 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gabi1361g00002 478 PRINTS Rhesus blood group protein signature 119 135 IPR002229 GO:0005886
Gabi1361g00002 478 PRINTS Rhesus blood group protein signature 246 268 IPR002229 GO:0005886
Gabi1361g00002 478 PRINTS Rhesus blood group protein signature 215 233 IPR002229 GO:0005886
Gabi1361g00002 478 PRINTS Rhesus blood group protein signature 301 319 IPR002229 GO:0005886
Gabi1361g00002 478 Gene3D Ammonium transporter AmtB like domains 6 442 IPR029020 -
Gabi1361g00002 478 FunFam Ammonium transporter 8 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1361g00002 Gabi-Chr1361 35483 38707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1361g00002 113 474 Inorganic Solute Cotransporters AT2G38290 59.392 1.45e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1361g00002 K03320 - gmx:100787856 822.002