Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi135g00004 ATGGCTGTGGAGCTTATAACGGGTTATGGGGGTAATAGCTTTGCAGGCAACAATGATTTTGCAGTGCAGCAAGCAGCTTCTGCTGGCATTCATAGCGTTGAGAAGCTCATGAACATGATTTCTGAACAGAAGAATCAGCAGCAACAAGCCAATGAGTCATCATCATCAAAGGATGAGTCAGAATTCGGAGCTGTTGCAGATGTTGCTGTAAACAGGTTCAGAGAGGTTATTTCTCTCCTTGACAAGCCAAGAACCGGTCACGCTCGTTTCAGAAGAGCCCCACCAAGTGTTCCACCTGTTCCTCTTCTTCAATTGCAGCAAACGGTGGATTCAAAACCCAAAAAAGACATGCTTTCTCTTCAGCACCCACACCCACAACAGCACAAAACAGAACAAGTCTCTGCTTTTAAAGCTTATTGCCCTCCTCAGAACCCTTTCACGCTCCCTCAGCAGCGTTTACCTTTACCACCAGCGAAGAATGAAACAAATGGTTCTATTAAACTTTCTGCTTCTCCATCAGTTTCTGCTGCCAAATCCTATGTGTCTACGTTATCTGCAGACAGCGAAAGTTTGCAACAGCAATCTCGTTCCTTCGGGTTCCAAATTACTCACGTGTCCCTGCAGGGGTCTTCTTATATGCGTAAACCACCACTGTCTTCAACTTCTTTGAAGAGGAAGTGCAATTCCATTGATTTTCCTGCAATCAAGTGTGGATCATCCTCTGCGCAGTGTCATTGCCCCAAGAAAAGGAAATTCAAGTTGAAGAGAGTGATTAGAGTTCCAGCTATTAGTTCTAAAACTGCTGATATCCCACCTGATGATTATTCGTGGAGAAAATACGGACAGAAACCCATCAAGGGTTCTCCCCATCCGAGAGGTTATTACAAGTGTACGAGCGTGAGAGGGTGCCCGGCACGCAAACACGTGGAGCGTGCTTTGGATGATTCAAACATGCTCGTTGTCACCTACGAAGGAGATCATAATCACTCGCTCACATCTTCTGAGGTGGCAAATGCTGTTGTCCTTGAATCATCTTAG 1038 0.4547 MAVELITGYGGNSFAGNNDFAVQQAASAGIHSVEKLMNMISEQKNQQQQANESSSSKDESEFGAVADVAVNRFREVISLLDKPRTGHARFRRAPPSVPPVPLLQLQQTVDSKPKKDMLSLQHPHPQQHKTEQVSAFKAYCPPQNPFTLPQQRLPLPPAKNETNGSIKLSASPSVSAAKSYVSTLSADSESLQQQSRSFGFQITHVSLQGSSYMRKPPLSSTSLKRKCNSIDFPAIKCGSSSAQCHCPKKRKFKLKRVIRVPAISSKTADIPPDDYSWRKYGQKPIKGSPHPRGYYKCTSVRGCPARKHVERALDDSNMLVVTYEGDHNHSLTSSEVANAVVLESS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi135g00004 345 MobiDBLite consensus disorder prediction 42 60 - -
Gabi135g00004 345 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 335 IPR044810 GO:0003700
Gabi135g00004 345 Pfam Plant zinc cluster domain 224 269 IPR018872 -
Gabi135g00004 345 Coils Coil 33 53 - -
Gabi135g00004 345 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi135g00004 345 Pfam WRKY DNA -binding domain 273 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi135g00004 345 Gene3D WRKY domain 258 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi135g00004 345 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi135g00004 345 FunFam WRKY transcription factor 65 255 332 - -
Gabi135g00004 345 MobiDBLite consensus disorder prediction 42 62 - -
Gabi135g00004 345 SUPERFAMILY WRKY DNA-binding domain 267 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi135g00004 Gabi-Chr135 60861 62627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi135g00004 15 292 WRKY Transcription Factor Family AT4G24240 44.371 1.59e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi135g00004 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi135g00004 - - lja:Lj0g3v0162929.1 447.973