Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1357g00012 ATGGGAGTTCCAGAGAAGGACCCTCTAGCTCAATTGAGTTTACCTCCTGGTTTTAGGTTTTACCCTACCGATGAGGAGCTTCTGGTTCAGTACTTATGCCGCAAGGTTGCAGGGCACCATTTTTCTCTGCCAATCATTGCAGAAATTGACTTGTACAAGTTCGATCCCTGGGATCTTCCAGGCAAGGCCATTTTTGGTGAAAAAGAATGGTACTTTTTCAGCCCCAGAGACAGGAAATACCCAAATGGTTCACGACCCAATAGAGTTGCTGGCTCTGGGTACTGGAAAGCCACCGGAACTGACAAAATCATCACCACTGAAGGTAAAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGTAAAGCACCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTTCTAGATTCTTCGAGAAGGAACAACAATGGTAGCTCGAAGCTCGATGATTGGGTTCTCTGTCGGATATACAAGAAGCACTCGAGCTCGCAGAAGAATGTGCAAAGCTTTTCCGGCAAAGAATACAGCAATGGATCGTCACCTTCTTCGTCGTCCCACATCGACGATGACCGGTGCTTTGCCCTGCCGGAAATTGATGACCGGTGTTTTGCCCTGCCGCGCGTGAACTCGCTCAGAACGCTGCAGCAGGACGACAAGTTCAGTTTTCAGAACATGGGTAACGGAATTTTCTCTGACTGGGTTAACCCGACGGGTTTGGACTTGGTACCCGAGTTTGTTTCGGATAGCCAAACTCAGGGGATGGTGAATTATGGTGGTAATGACCTATTTGTCCCTTCTATGCCACCGTTTGGGAACACCAACACGGTGGCGTTGCCCCGTAACTCAATGGAGGAGGAGGTTCAGAGTGGTGTGAGGACCAACCCGGTTGCTCAGAATTCCGGGTTTTATCAGCAGAATCCGAATGTGTTCACACAGCGATTGTTTTCTGGCTCGGATGACCCGTTTGGGTTCGGGTATCCGGGTCAGCAAAACGGGTTCGGGTTCCGGGAATGA 1029 0.4898 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWDLPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRRNNNGSSKLDDWVLCRIYKKHSSSQKNVQSFSGKEYSNGSSPSSSSHIDDDRCFALPEIDDRCFALPRVNSLRTLQQDDKFSFQNMGNGIFSDWVNPTGLDLVPEFVSDSQTQGMVNYGGNDLFVPSMPPFGNTNTVALPRNSMEEEVQSGVRTNPVAQNSGFYQQNPNVFTQRLFSGSDDPFGFGYPGQQNGFGFRE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1357g00012 342 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Gabi1357g00012 342 FunFam NAC domain-containing protein 72-like 23 169 - -
Gabi1357g00012 342 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gabi1357g00012 342 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Gabi1357g00012 342 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Gabi1357g00012 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1357g00012 Gabi-Chr1357 165370 166872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1357g00012 1 342 NAC Transcription Factor Family AT4G27410 57.025 5.51e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1357g00012 NAM 5.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1357g00012 - - gmx:100811301 514.998