Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1357g00008 ATGGAACAGAGCATCCAATGCAAATACACTGTTCACAACACAACAGTCACCAAAAAACTCTCTAAGCCTAAAAAACTCTCCGGTGCTGCTATTCTCACATGCCCCAAAGCGATTCGCGTATCCGTCACTGATCCAGATGCCACTGACTCCTCCAGCGATGAAGAAAGAGACCACTTACCTCGCCGGAGAATGAAGCGCTATGTTCACCGGATTGACATCCAGTCCGCAGAAAAAACCGTTGCAACCACCGTCAGGAAGAGGCCCACCGGAGAAACCACTCTTTCCCGGCCGCCGGCCAAGGTCTCGGCGGCGGCGGCTAACAACGGCAGAAAGTTTCGCGGCGTGCGGCAGAGACCTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCGACGAAGCGCGTGCGGCTCTGGTTGGGTACCTACGACACTGCCGAGGAAGCAGCCATGGTGTATGACAATGCCGCAATTAAGCTTCGAGGTCCTGGTGCTCTAACAAACTTCGTTATTCCGCCGGCGATTGAGAAGCCGGTGGAAGCGGAAGTCCCCAACGGAAAACCAGAAATGAACGTGGTTGTTGCGAAATCGGAGGCGTCTGGCTCCGGCTACGAATCCGGAGAAGAGTGTCTCAATCTTTCTTCGCCTACTTCGGTTCTCCGATTCACACGCGAGGAAACCAGCGAACCGCAGAAACCGGTTGAACCGGAAAAAGTGTTTGCTGAACCGGTGGGAGAATGTCAAGATGAGACGAGGTTGTTCGACGAGTTTTTCCGACAGGACATGCCGGCGTGGGATGATGTTTTCAATTTTCCATCGACTCCGGATTACTCGGTAATGTTTGAAGAGCCTGCTTCGCACTTGTTTGATGAAACGACACCGGTTTTTGTTAGTGAGGGTTTAAGCCATCTCACAGATTTTGATTTTGGGAAAACCGACTCGCCATCAACGTTGTGCCAAGTGGACGATTACTTCCATGACATTTTGTTAGGTTCAGATCCTCTCGTGGTGCTGTGA 1011 0.5213 MEQSIQCKYTVHNTTVTKKLSKPKKLSGAAILTCPKAIRVSVTDPDATDSSSDEERDHLPRRRMKRYVHRIDIQSAEKTVATTVRKRPTGETTLSRPPAKVSAAAANNGRKFRGVRQRPWGKWAAEIRDPTKRVRLWLGTYDTAEEAAMVYDNAAIKLRGPGALTNFVIPPAIEKPVEAEVPNGKPEMNVVVAKSEASGSGYESGEECLNLSSPTSVLRFTREETSEPQKPVEPEKVFAEPVGECQDETRLFDEFFRQDMPAWDDVFNFPSTPDYSVMFEEPASHLFDETTPVFVSEGLSHLTDFDFGKTDSPSTLCQVDDYFHDILLGSDPLVVL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1357g00008 336 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 MobiDBLite consensus disorder prediction 43 62 - -
Gabi1357g00008 336 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
Gabi1357g00008 336 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 246 - -
Gabi1357g00008 336 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Gabi1357g00008 336 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Gabi1357g00008 336 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1357g00008 Gabi-Chr1357 115958 118052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1357g00008 7 284 AP2-EREBP Transcription Factor Family AT4G27950 43.197 5.83e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi1357g00008 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1357g00008 - - pcin:129303306 329.717