Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1357g00004 ATGAGCAAGAAGCTGGGCCTCTTGTTCATTTCTTCAGCAGCCTTCATGATTGGAGCAATGTTCTTTGGTGCTGGAGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTCACAACATTGATCACTCTCCTCATCTCAACTGGCATAAGAACTCTTCTGTATGCAAAAACTGGACAGGAGTGACCTGCAACACTGACCAATCAAAAGTTATAGCTCTCCAACTACCCAGAACTGGATTGAGTGGTCCAATCCCACCCAACACTCTTAGTCGCCTCTTAGCACTCCAGACTGTGAGTCTTACATCAAATAGTATAACTGGTTCTTTCCCTTCTGGCTTCTCTGAGATGAAGAATTTGACCTATCTCTACCTCCAATTTAACAATTTTTCTGGTCCATTGCCATCAGATTTTTCAGTTTGGCATAATCTTACTGTTGCCAATTTATCCAACAATTCTTTTAACGGGAGCATCCCTTCTTCAGTTTCAAATTTGACTCATCTCACTTCTTTAGTCCTATCCAGCAACTCTCTTTCAGGTGAAATTCCTGATCTCAATATTCCTAGCCTGCAAGAGCTAAATTTGGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTCAGAGATTTCCAAGTTGGGCCTTTTCTGGTAACAATCTTACCTCAACATATGCACTTCCTCCTGCTTTTCCTTTTCAACCCCCGAATGCTCATCCTAAAAGGAAAACCAAAGGACTTAGAGAACCAGCATTATTAGGTATCATCATTGGTGGTTGTGTGCTGGGATTTGCAGTGATGGCATTTTTCGTGATTGTGTGTTGCTATAAGAAAGGTGGTGAAGATGGACAACCAGTGAAGTTCCAGAAAAAAGAAGTGTCTCGGAAAAAAGAAGTTTCAGAAAGTCGAGAGAAAAACAAAATAGTCTTCTTTGAGGGTTGCAATCTTGCATTTGACCTTGAGGACTTGTTGAGAGCATCTGCTGAGGTACTTGGAAAGGGCACATTTGGTACGGTATATAAGGCTGCTCTAGAGGAAGCAACAACTGTGGCGGTGAAGAGGTTGAAGGAGGTTACGGTTGGAAAGCGCGAGTTTGAACAGCAAATGGAGGTTGTGGGGAGGATCAGACACGACAATGTGGCTGCACTGAGGGCATATTACTATTCAAAGGACGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTCTCTGCAATGTTGCATGGCAAAAGAGGAGAAGGCAGGATTTCTTTAGACTGGGATAGCCGTTTGAGAATTGCAATTGGTGCAGCAAGAGGCATTGCTTACATCCATGCTCAACATGGAGGGAAACTAATCCATGGAAACATAAAATCCTCAAACATCTTCCTCAACTCCCAAGGTTATGGTTGTCTATCTGATATTGGTCTAGCAACATTGATGAGTCCAATACCCCCACCAGCATTGAGGGCTACAGGGTATCGTGCATTCGAAGTAACAGACACACGAAAAGCAACCCCAGCATCTGATGTCTTTAGTTTTGGGGTGCTGCTACTTGAGCTTCTAACTGGGAAATCACCTATGCATGCCACAGGAGGTGAGGAGGTTGTTCACTTGGTTAGGTGGGTGAATTCTGTTGTTAGAGAGGAATGGACTGCAGAAGTGTTTGATGTAGTTTTACTGAGGTATCCAAATATAGAGGAAGAAATGGTTGAGATGCTACAAATAGGGATGGCATGTGTTGTGAGAATACCAGATCAGAGACCAAAAATGGAAGAGGTGGTGAGAATGGTGGAGGAAATTCGTCGAGTAAATACTGAAAATCGACCATCCACAGAATCTAGATCAGAAGGTTCTACTCCAACCCCTTATGCAATTGAGACACCTTCTACATGTCTTCCATAG 1893 0.4305 MSKKLGLLFISSAAFMIGAMFFGAGAEPVEDKQALLDFLHNIDHSPHLNWHKNSSVCKNWTGVTCNTDQSKVIALQLPRTGLSGPIPPNTLSRLLALQTVSLTSNSITGSFPSGFSEMKNLTYLYLQFNNFSGPLPSDFSVWHNLTVANLSNNSFNGSIPSSVSNLTHLTSLVLSSNSLSGEIPDLNIPSLQELNLANNNLSGVVPKSLQRFPSWAFSGNNLTSTYALPPAFPFQPPNAHPKRKTKGLREPALLGIIIGGCVLGFAVMAFFVIVCCYKKGGEDGQPVKFQKKEVSRKKEVSESREKNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEEATTVAVKRLKEVTVGKREFEQQMEVVGRIRHDNVAALRAYYYSKDEKLMVYDYYEQGSVSAMLHGKRGEGRISLDWDSRLRIAIGAARGIAYIHAQHGGKLIHGNIKSSNIFLNSQGYGCLSDIGLATLMSPIPPPALRATGYRAFEVTDTRKATPASDVFSFGVLLLELLTGKSPMHATGGEEVVHLVRWVNSVVREEWTAEVFDVVLLRYPNIEEEMVEMLQIGMACVVRIPDQRPKMEEVVRMVEEIRRVNTENRPSTESRSEGSTPTPYAIETPSTCLP 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1357g00004 630 Gene3D Ribonuclease Inhibitor 29 236 IPR032675 -
Gabi1357g00004 630 Pfam Leucine rich repeat 86 131 IPR001611 GO:0005515
Gabi1357g00004 630 Gene3D Transferase(Phosphotransferase) domain 1 401 616 - -
Gabi1357g00004 630 SUPERFAMILY L domain-like 41 215 - -
Gabi1357g00004 630 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1357g00004 630 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Gabi1357g00004 630 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Gabi1357g00004 630 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Gabi1357g00004 630 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Gabi1357g00004 630 SUPERFAMILY Protein kinase-like (PK-like) 330 595 IPR011009 -
Gabi1357g00004 630 MobiDBLite consensus disorder prediction 607 630 - -
Gabi1357g00004 630 MobiDBLite consensus disorder prediction 601 630 - -
Gabi1357g00004 630 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Gabi1357g00004 630 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Gabi1357g00004 630 ProSiteProfiles Protein kinase domain profile. 326 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1357g00004 630 PANTHER OS05G0588300 PROTEIN 15 608 - -
Gabi1357g00004 630 FunFam pollen receptor-like kinase 1 295 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1357g00004 Gabi-Chr1357 51462 54081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1357g00004 20 622 Receptor kinase-like Gene Family AT4G23740 57.166 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi1357g00004 Pkinase 2.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1357g00004 - - aprc:113851984 996.882