Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1357g00003 ATGAGGTCGAGGATATGTGTGAAGAATCTCCCAAAATATGTGAGGGAGGATCGACTACGAGAATTCTTTTCTGAAAAGGGAGAAATCACTGACGTCAAGCTTATACGTACCAAGGAAGGTAAGAGTCGCCGATTTGGTTTTATTGGATTTCGTACAGAGCATGAAGCTCAGGAAGCTATTGATTATTTCAATGGGACTTGCCTTGACACACAAAAAATAACTTGTGAGGTGGCTCAAAAACTTGGTGATCCAAGTCTTCCTCAGCCATGGAGTCGATATTCAAAACAGAAAGACAATAAAGGGACCACCCCATCTAATGTGAACAAACATAAGATGCCAAGGATAATAAAGACAACAAGGAGTCGATATGTGAAGGAACATTCTGGAGCTAAAGGACAAGGAGAAGATTCCAAGGACGTTGTTGATATTGATGACCAACAGCTTAAAGATTTTCTTCAGGTCATGGAGCCTCGGGCTAAGTCTAAACTGTGGGCAAATGATACATCAGTTGTATCCAGTGTTGGCAACCATCAAGCAATATCAAATAAGGATAACAAGGGTACATCGGCTGCGAACCATCGCGTCTTACATCAAAGTGCATTAGAAGATGGCTTTCCAAATAATCCTGAACCCAACAAGTCACGGGATCTTGAACATGATGAAGTCATTTCTGATATGGACTATTTCAAGCGTAGAGTGACAGAGAAGTGGTCTGATTCTGGAAGTAGTGATGATGAAGATGATAATGACAACAATGATTCGGTATGCATTGATGATCACGGCAAAGACAATCATAGTCATGTTAATGAAGATGAAGAAAATTGTGATAATAAATCTTCCAAAAGAACCGGAAGAAATGATGCTCAACAGTTAGACCTGGAGGGCCAAGAAGATACTTCTGGAGAGGATGTTGACCATGAAAAGGCTCAAGTGAATGCAACTGAGCAAGGGGGCCAAGTTTCAAATTCAGAAGATGAGAAAGGAGTTTTTGAGCCCTGCCGACTGTTTGTCCATAATCTGCCATATATGACCACTGAGGCTGAACTGGAAGAGCATTTCAGTCGGTATGGTAGTGTATCACAGGTTCATCTAGTTGTTGATAAAGATACTAAACGATCCAAAGGAATAGCGTATATTCTTTTTTCACTTCCAGAATTTGCATCTAGGGCGCTCGCGCTAGAAAAAAAAAATCCAATCTTTCAAGGAAGATTGATGCATGTTAAGCCAGCCAAACAAAGACCTTCAAACTATGATGGGAACAATGTTTCAAAGGATCAAAGAACTAAAACTCTCAAACAACGGAGAGAGGAAGAGAGGAAGTTGACTGAAGCCAGTGGAGATACCAAAGCATGGAATAGTTCGTTCATGCGCCCTGATACAGTTGTGGAATACATTGCCCGGAAATATGGTGTCAGTAAAAGTGATTTACTTGACGTAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTGATTTTAGAGAGAAAAAAGGCATTTACAAATGCCGGAGTGAATGTGGAGTCTTTGGAGGAACTTGCAAATGGAAAAGTTGACGGCTTAAAAAGAAGTAACCATGTGATTTTAGTGAAGAACTTGCATTACGGTTCTACAAAAAATGAACTTGCAAAGAAGTTTGGGAAATTCGGTAATTTGGACAAAATAAATCTCCCTCCCACAAAGACATTGGCCCTGGTTGTTTTCCTTGAACCAGCGAACGCTCAAGCAGCTTTTAAACATTTACGTTACACGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCATTCCAATGTTCTTAGCCCAAGTGCAACATCTAAAAATAATGAAATGAATAGTCCAATTGATGAAAATGATGCCAAGCGGCTGATATTTGAGCAACACGTGGAAAAAATATCAGATGTGGACATTGATCCAGACAGAGTAGAGGCTCAGTCCCTGCGTGTCAAGAACCTCAATTTCAAGACATCAGATGAGCGTCTGGGGAAGCATTTTACTGAACACATAAAAGAGGGAAGAATTTTGAGTTTCAAGGTGCAGAAGCACTTGAAAAATGGGGAAAAAGTTTCTTCGGGATATGGATTTGTTGAGTTTGACTCCACGGAGACAACTAAGAATGTTTGTAGAGATTTACAGGGGACTGTTTTGGACGGGCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGGCGGGCAAGTACGAAAGACAGTTGAGAAGGATAAGAGTTCTATAAAATTGCTGGTAAGAAATGTTGCTTTTGAGGCAACAAAGAAGGACTTGAGACAGTTCTTTAGCCTATATGGCCAGATTAAAAGCTTAAGGTTGCCAAAGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTGAAGCACACTCACGCACCCACCTGTATGGTAGGCGTCTGGTGATAGAGCGCGCGAAAGAAAGTGATAGTTTGGAAGAACTAAGGACTCGAACAGCTGCTCAATATAATGAACAAAATGGATTTCAAAATTCTACTAAATTATCGAAGAAAAGGAAGCACATGGGCAATTTTGATGAAGAAAAGGTGAAGTTTCAAAGGATTGCTGATTAG 2625 0.4057 MRSRICVKNLPKYVREDRLREFFSEKGEITDVKLIRTKEGKSRRFGFIGFRTEHEAQEAIDYFNGTCLDTQKITCEVAQKLGDPSLPQPWSRYSKQKDNKGTTPSNVNKHKMPRIIKTTRSRYVKEHSGAKGQGEDSKDVVDIDDQQLKDFLQVMEPRAKSKLWANDTSVVSSVGNHQAISNKDNKGTSAANHRVLHQSALEDGFPNNPEPNKSRDLEHDEVISDMDYFKRRVTEKWSDSGSSDDEDDNDNNDSVCIDDHGKDNHSHVNEDEENCDNKSSKRTGRNDAQQLDLEGQEDTSGEDVDHEKAQVNATEQGGQVSNSEDEKGVFEPCRLFVHNLPYMTTEAELEEHFSRYGSVSQVHLVVDKDTKRSKGIAYILFSLPEFASRALALEKKNPIFQGRLMHVKPAKQRPSNYDGNNVSKDQRTKTLKQRREEERKLTEASGDTKAWNSSFMRPDTVVEYIARKYGVSKSDLLDVEADDLAVRIALGETQVILERKKAFTNAGVNVESLEELANGKVDGLKRSNHVILVKNLHYGSTKNELAKKFGKFGNLDKINLPPTKTLALVVFLEPANAQAAFKHLRYTRYKDAPLYLEWAHSNVLSPSATSKNNEMNSPIDENDAKRLIFEQHVEKISDVDIDPDRVEAQSLRVKNLNFKTSDERLGKHFTEHIKEGRILSFKVQKHLKNGEKVSSGYGFVEFDSTETTKNVCRDLQGTVLDGHALILQLCHVKNGGQVRKTVEKDKSSIKLLVRNVAFEATKKDLRQFFSLYGQIKSLRLPKKFGSHRGFAFVEYVTQQEAQNALEAHSRTHLYGRRLVIERAKESDSLEELRTRTAAQYNEQNGFQNSTKLSKKRKHMGNFDEEKVKFQRIAD 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1357g00003 874 CDD RRM1_MRD1 3 78 - -
Gabi1357g00003 874 FunFam Multiple RNA-binding domain-containing protein 1 520 622 - -
Gabi1357g00003 874 FunFam RNA-binding motif protein 19 2 101 - -
Gabi1357g00003 874 SMART rrm1_1 4 76 IPR000504 GO:0003723
Gabi1357g00003 874 SMART rrm1_1 650 728 IPR000504 GO:0003723
Gabi1357g00003 874 SMART rrm1_1 530 597 IPR000504 GO:0003723
Gabi1357g00003 874 SMART rrm1_1 750 821 IPR000504 GO:0003723
Gabi1357g00003 874 SMART rrm1_1 334 408 IPR000504 GO:0003723
Gabi1357g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 749 825 IPR000504 GO:0003723
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 86 109 - -
Gabi1357g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 412 IPR000504 GO:0003723
Gabi1357g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 732 IPR000504 GO:0003723
Gabi1357g00003 874 CDD RRM6_RBM19_RRM5_MRD1 750 823 - -
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 405 445 - -
Gabi1357g00003 874 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 630 741 - -
Gabi1357g00003 874 SUPERFAMILY RNA-binding domain, RBD 4 89 IPR035979 GO:0003676
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 254 292 - -
Gabi1357g00003 874 Gene3D - 1 138 IPR012677 -
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 235 326 - -
Gabi1357g00003 874 SUPERFAMILY RNA-binding domain, RBD 526 614 IPR035979 GO:0003676
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 425 445 - -
Gabi1357g00003 874 Gene3D - 230 421 IPR012677 -
Gabi1357g00003 874 Gene3D - 646 736 IPR012677 -
Gabi1357g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 601 IPR000504 GO:0003723
Gabi1357g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 73 IPR000504 GO:0003723
Gabi1357g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 531 593 IPR000504 GO:0003723
Gabi1357g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 395 IPR000504 GO:0003723
Gabi1357g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 651 725 IPR000504 GO:0003723
Gabi1357g00003 874 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 751 818 IPR000504 GO:0003723
Gabi1357g00003 874 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 80 IPR000504 GO:0003723
Gabi1357g00003 874 SUPERFAMILY RNA-binding domain, RBD 637 734 IPR035979 GO:0003676
Gabi1357g00003 874 CDD RRM4_RBM19_RRM3_MRD1 529 599 - -
Gabi1357g00003 874 SUPERFAMILY RNA-binding domain, RBD 321 421 IPR035979 GO:0003676
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 89 109 - -
Gabi1357g00003 874 PANTHER RNA-BINDING MOTIF PROTEIN 14B 333 623 - -
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 199 222 - -
Gabi1357g00003 874 SUPERFAMILY RNA-binding domain, RBD 744 834 IPR035979 GO:0003676
Gabi1357g00003 874 Gene3D - 523 626 IPR012677 -
Gabi1357g00003 874 Gene3D - 739 851 IPR012677 -
Gabi1357g00003 874 MobiDBLite consensus disorder prediction 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1357g00003 Gabi-Chr1357 22574 43497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1357g00003 653 868 Eukaryotic Initiation Factors Gene Family AT1G71770 29.730 1.32e-10 63.2