Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1353g00005 ATGTCTATAAACCACTACTCATCGGAGACACCAGAAACGACGACGTTATGGTGGACTCAGCAACAGACCTCACCGCCCCTCGATGACGAACAAGGAGCCACCACAACCACAAGCTCTCCGCAAGAAGGAGAAGAGGAGGTGAAGGAGGCCATGTTCGAGAAGCCATTGACGCCGAGCGACGTGGGGAAGCTTAACCGCCTCGTCATCCCGAAACAGCACGCGGAGAAGTACTTCCCACTCGGTGGCGACTCAGGGGAGAGCAAGGGGCTGCTACTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGTTTCCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGCTGGAGTCGTTACGTTAAGGACAAACGCCTCGATGCTGGCGACGTCGTTTTGTTCCAAAGACACCGCGCCGATGCTAACCGATTCTTCATCAGCTGGAGGCGCCGCCACCCGAGTGCTCCGGCGCATGTTAGCAGCAGAGTAGGGTCTCACAGCAAGAGTAGCAGTGATGGGAATAGCAATGCTAAGAATGCGAATGGGGTGGATGGCGCTGTTCCTGTGGGGTGGACCAGAGACTTCTATCCTGCGCATCCTTATCCTGCGCATCATCACCACCCCTTGCCATACCAACCTCACTCTCTTCATGCAGGTGGAGGGTCCCAAGGACAGAGCGAAACGACACCGGGTTCCAGTTCCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATTCCGGAACCTTCACACCCCAATGCTCCTATAATATGTCGTCAACGCAGGGTACACCTAACCACCATTTCTACCACCATCATCGACCTTCTTATTCTTCTTCCAACCCTCACCATCACATGCTACGTCAACAACCAGACTAG 906 0.5408 MSINHYSSETPETTTLWWTQQQTSPPLDDEQGATTTTSSPQEGEEEVKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGDSGESKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADANRFFISWRRRHPSAPAHVSSRVGSHSKSSSDGNSNAKNANGVDGAVPVGWTRDFYPAHPYPAHHHHPLPYQPHSLHAGGGSQGQSETTPGSSSRVLRLFGVNMECQPDNDSGTFTPQCSYNMSSTQGTPNHHFYHHHRPSYSSSNPHHHMLRQQPD 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1353g00005 301 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 263 IPR044800 GO:0003700
Gabi1353g00005 301 SMART B3_2 52 156 IPR003340 GO:0003677
Gabi1353g00005 301 Pfam B3 DNA binding domain 52 155 IPR003340 GO:0003677
Gabi1353g00005 301 FunFam B3 domain-containing protein 45 165 - -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 1 41 - -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 207 237 - -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 274 301 - -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 1 53 - -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 222 237 - -
Gabi1353g00005 301 SUPERFAMILY DNA-binding pseudobarrel domain 51 156 IPR015300 -
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 164 185 - -
Gabi1353g00005 301 Gene3D - 41 163 IPR015300 -
Gabi1353g00005 301 CDD B3_DNA 51 154 IPR003340 GO:0003677
Gabi1353g00005 301 ProSiteProfiles B3 DNA-binding domain profile. 52 156 IPR003340 GO:0003677
Gabi1353g00005 301 MobiDBLite consensus disorder prediction 160 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1353g00005 Gabi-Chr1353 44101 45582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1353g00005 1 272 RAV Transcription Factor Family AT5G06250 46.667 2.49e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi1353g00005 B3 2.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1353g00005 K09287 - gmx:100818164 320.472