Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1353g00002 ATGGCGGCCATCAGAAGAATAATTGCATCCGACAAAGCCTTATTGCCATCTCTTCTCACTTTTCGCAGGGGAATCGCTTTTAAGCTTTTCGTTGGAGGACTGTCCTTCTACACGACAGAGAAAGCATTATCAGATGCATTCTCAAATTACGGACAAGTTATTGAAGCTAAAATTATAACAGATAGGGTGTCAGACAGGTCTAAAGGGTTTGGGTTTGTCACCTTTGCTTCAGAAGATGAGTCTGAGAATGCCATAACAGAGATGAATGGAAAGGCACTAAATGGACGTGTTATCTATGTTGATTATGCAAAACCCACGACCAACTCTGGTTTTGGAATCCCAATTGCCAGAGGGCCTCCTGAACCAACAGCAGACAGTTGA 381 0.4304 MAAIRRIIASDKALLPSLLTFRRGIAFKLFVGGLSFYTTEKALSDAFSNYGQVIEAKIITDRVSDRSKGFGFVTFASEDESENAITEMNGKALNGRVIYVDYAKPTTNSGFGIPIARGPPEPTADS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1353g00002 126 SMART rrm1_1 28 101 IPR000504 GO:0003723
Gabi1353g00002 126 SUPERFAMILY RNA-binding domain, RBD 27 114 IPR035979 GO:0003676
Gabi1353g00002 126 Gene3D - 24 119 IPR012677 -
Gabi1353g00002 126 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Gabi1353g00002 126 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 24 108 - -
Gabi1353g00002 126 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1353g00002 Gabi-Chr1353 18344 19777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1353g00002 29 104 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 3.32e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1353g00002 - - pvu:PHAVU_001G192800g 199.904