Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1349g00008 ATGGCCGCATCCGAGATTAACTGGGACAAGCTAGATAAAACAAAGTTCTATGTCGTAGGAGCTGGACTCTTTACGGGTGTTACAGTGGCACTCTACCCAGTTTCTGTTGTGAAGACTAGACTGCAGGTTGCTTCAAAGGATACTTTGGAGAGAAATGCATTTTCTGTTGTGAAAGGATTACTTAAAACTGATGGCATCCCTGGTTTGTATAAAGGGTTTGGCACAGTTATAACTGGTGCAGTTCCTGCCAGAATCATATTCCTCACTGCTTTAGAGACCACAAAGGTGGCTGCCTTCAGGATGATTGAGCCATTTAGACTATCTGAAACTACCCAGGCTGCCATAGCAAATGGAGTTGCAGGCATGACATCGTCACTTTTCTCACAGGCTGTGTTTGTTCCAATTGATGTGATTAGCCAAAAGTTGATGGTCCAAGGATACTCAGGCCATGCCCAGTATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGCTAAGATCTGATGGCATCAGGGGATTATATAGAGGGTTTGGTCTATCTGTTATGACTTATTCACCATCTAGTGCTGTATGGTGGGCAACTTATGGATCGAGTCAACGCTACATATGGAGATTCTTGGGAGATGGTGTTGAATATAAGGAAGGTACTCCTAGTCTACCAAAGATTATTTTAGTTCAGGCAACTGGAGGAATTATTGCTGGTGCTACTGCATCCTGCATTACAACCCCATTGGATACTATCAAGACAAGGTTACAGGTGATGGGACTTGAAAAGAGAAGCTCTGTAAAACAAGTTGTTAAAGACTTGATCAACGAAGATGGATGGAAAGGTTTATATAGAGGATTAGGTCCAAGATTTTTTAGCATGTCAGCATGGGGTACTTCAATGATATTGACTTATGAGTATTTAAGTAAGAACTCTTGCTTTCTGATTACATTCTGTGTGTGTTTCTACTTTTGTCAGCTTATTCTGGTCTGGTGTATTCAAATATTGAAATAA 996 0.4147 MAASEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERNAFSVVKGLLKTDGIPGLYKGFGTVITGAVPARIIFLTALETTKVAAFRMIEPFRLSETTQAAIANGVAGMTSSLFSQAVFVPIDVISQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYSPSSAVWWATYGSSQRYIWRFLGDGVEYKEGTPSLPKIILVQATGGIIAGATASCITTPLDTIKTRLQVMGLEKRSSVKQVVKDLINEDGWKGLYRGLGPRFFSMSAWGTSMILTYEYLSKNSCFLITFCVCFYFCQLILVWCIQILK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1349g00008 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Gabi1349g00008 331 SUPERFAMILY Mitochondrial carrier 9 302 IPR023395 -
Gabi1349g00008 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Gabi1349g00008 331 Gene3D Mitochondrial carrier domain 17 307 IPR023395 -
Gabi1349g00008 331 Pfam Mitochondrial carrier protein 225 303 IPR018108 -
Gabi1349g00008 331 Pfam Mitochondrial carrier protein 115 201 IPR018108 -
Gabi1349g00008 331 Pfam Mitochondrial carrier protein 21 96 IPR018108 -
Gabi1349g00008 331 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 304 - -
Gabi1349g00008 331 FunFam Mitochondrial substrate carrier family protein 17 308 - -
Gabi1349g00008 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 305 IPR018108 -
Gabi1349g00008 331 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Gabi1349g00008 331 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Gabi1349g00008 331 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1349g00008 Gabi-Chr1349 71596 77933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1349g00008 6 304 Chloroplast and Mitochondria Gene Families AT5G15640 78.405 3.24e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1349g00008 K15121 - gmx:100819519 528.865