Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1349g00004 ATGGCACCAATGCCCGCAATGTTATTCCCTTGTCATGGAAATAAAGACTACATATCTGCATCGGTGTTACACTACATTCGTTCCAGAACCAAGTTACCTATCAACCACCGTGCGGTGAAATCATGCAACATTCTTTTGGACGAGAATTTGATGCCTAAAGTGGCAGATTTTGGACTCTGCAAGAAGCAACCTCATGAGGAGTCAAAGCCAAAGCCACCAAAATTTGAGTTGAGGGAGAACTTGGAACTTATTTTGGAATACATGAACCCTGAGTATCATGCTACTGGATGGCTATCTGAGAAGTCTGATGTGTATTCTTTTGGTGTGGTTCTGTTGGGATATTTTTTGCACAAAGGAAGAGTATTTTTTGACCTCAGATAG 381 0.4147 MAPMPAMLFPCHGNKDYISASVLHYIRSRTKLPINHRAVKSCNILLDENLMPKVADFGLCKKQPHEESKPKPPKFELRENLELILEYMNPEYHATGWLSEKSDVYSFGVVLLGYFLHKGRVFFDLR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1349g00004 126 SUPERFAMILY Protein kinase-like (PK-like) 20 116 IPR011009 -
Gabi1349g00004 126 Pfam Protein tyrosine and serine/threonine kinase 21 112 IPR001245 GO:0004672|GO:0006468
Gabi1349g00004 126 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1349g00004 126 PANTHER OS01G0253100 PROTEIN 22 112 - -
Gabi1349g00004 126 Gene3D Transferase(Phosphotransferase) domain 1 18 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1349g00004 Gabi-Chr1349 31757 32137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1349g00004 20 112 Receptor kinase-like Gene Family AT1G21240 50.538 1.04e-22 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi1349g00004 PK_Tyr_Ser-Thr 2.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1349g00004 - - vum:124837524 142.895