Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1349g00001 ATGAGCTTCAATAGTACCACCACCATCCTCTACCTTTCTCTTTTCATCTTGCTCTTTCACCTCACCACACAAATCAAAGCTTACGAACCAGAGGATCATTTCACCATCAATTGTGGAACCACAGGCACCGTCTCCGACGGTGATAGAACATGGACAGGTGACACAGACTCAAAACTCTTATCTCTTAACAACCCAACAACAACAACAGTGTCTGCTACAGCAACAACACAAGCTCCTTCAATTAACACAGTCCCTTATTCCACATCTCGTCTTTCTCATTCTGAATTCACCTACTCCTTCCCTCTCACCACAGGCCCGAAATTCCTACGCCTCTTCTTCTACCCAGCTTCATATCCTGAATTCGACCGCACCCAATCATTCTTCACCGTCAAATCCGGTGTCTTCACACTCTTACAGAACTTCAACGCTTCACTCACAGCTGACGCTGAAGGCAAGGAAACAACAATCTTCAAAGAATACATAATCAACGTTGACGATAGTCAAAGGCTCAACCTAACCTTCACTCCAAACACAACATCACAACAACCAAACTGTTACGCTTTCATCAACGGAATCGAGGTTCTGTCCATGCCTGATGATCTCTACTACACAGCTTCAACAAACCCAGGATTCAAGCTTGTGGGTACAGGCACAACCCAATACAGCGTTTCATCAAAAACTGCACTCGAGACAGATTATAGAATCAAAGTCGGTGGCCAAGCAATCTCGCCGCGAAACGACACCGGACTTTTGAGAATCTGGGAAGGTCACGATGAAGATTATCTAATGAGACCAAGTGCACGTGATGATCTACCAGGTGATATCTCAGGTAACATGAGTATCACTGTGAATCCTGATTATGTAGCACCCGTTCAACTCTACAGAACAGCACGTGATATGGGTAAAAATGGAACTCTGAATAAAATGTTGAATTTGACTTGGGGTTTTCAAGTTGATACTGGCTTCTACTATATGGTTAGGTTGCACTTTTGCGAGCTTGACCCGAATATCAACGAGCCAAGTGACAGGGCTTTCTTCATATACATAGATGGCCAGATAGCAGAGGAACGTGCTTCTGTTCTGAGATGGAGTAAGCAAAAGGGTGTTGCTGTTCACAGAGACTACGCCGTTTCGATTCCGTTGAGTGTTAATCAGAAAAGGGTTAATCTTTCTATCCAAATGCATCCTTATACAGATTATAAGGATACAAGATTTAGTGACCCATTCTTGAACGGTCTCGAAATCTTCAAAATCAGCGACGCCGGGTCTAACAACCTCGCCGGACCCAACCCGGATCCGATCCAAGAACCGGGAAATTCACCGGTTATTCAAAACGGCAAGAAAAAGAAGAGCGTGACCGTCGTCGTCGTCGCGGGGGTGGTTTCCGGAGTCGTCGTTTTGGTCTTGATCGTCGTCGTTTTGTTCCTCTTCCTTGTAAAGAGAAAAACCACAACCCAGTCCCAAACCAAAACCAAGCATTCGAAGTCTTCCGCGACTTCGAAGTGGGGTCCACTTTCATTCTCAACGACCAAGTCAACAAACACGCAGAACTCATCCCTACCGTCGGATCTCTGTCGACAATTCTCGCTCGTCGAGATCAAATCCGCCACCAACAACTTCGACGAGGTTTTCATCGTTGGCGTTGGCGGATTCGGCCACGTGTACAAGGGCTACGTCGATAACGGTTTAACCGCTGTGGCAATCAAGCGTCTCAAACCGGGTTCGCAGCAGGGTGCGAACGAGTTCATGAACGAGATCCACATGCTATCGCAGCTTCGCCACCTTCATCTCGTTTCTCTTATTGGCTACTGCAACGAGAATAGCGAGATGATCTTGGTCTATGATTTCATGACACGTGGCACTCTCCGCGACCATCTCTACAACACCGATAACCCTGCTCTGAAGTGGAAGCAACGGTTGCAGATTTGCATCGGAGCAGCGCGTGGGCTGCATTACCTCCATACAGGCGCGAAGCATGTTATCATCCACCGCGACGTGAAAACGACGAATATCTTATTGGATGAGAAATGGGTGGCGAAGGTTTCGGATTTCGGGTTATCGAGAATTGGGCCTACGGGCATGTCAAAGGCCCATGTGAGCACCGTGGTTAAGGGCAGCGTTGGGTATTTAGACCCGGAGTATTATAAACGGCAGCGTTTGACGGAGAAGTCTGACGTGTACTCATTTGGAGTGGTGCTGTTTGAGATACTGTGTGCTCGACCGCCTCTGATCCGAACCACGGAGAAGAAACAGGTGTCGCTTGCTGATTGGGCGAGGCATTGTTACAAGAGTGGGACCCTGGGTCAGATTGTGGACCCCGCGTTGAAGGGTAGTATTGCGCCAGAATGCTTGAGGAAGTTCGGTGAGATTGGCGTGAGCTGTTTGCTGGATGATGGGACACAGAGACCTTCGATGAACGACGTCGTTTGGATGCTGGAGTTTGCGTTGCAGTTACAAGAGAGTGCTGAGCAGCGTGATGAGAATGGTGTTGGAATGGTTGTAAAAAGAGATGATAGTGATGATATATTGTTCAGTAGTGGGACCAGCTTGGGGCAGGTTTCGGATTTCAATAAGAGTAGTGGAGTGAGTGTGACGACTAGCAGCGGAGAACATAGCTCTGGTAATAAGGAAAGTGATAAATTGATGATGTCTGGGACTGTTTTCTCTGAGATTATGGACCCAAAGGCACGTTGA 2694 0.474 MSFNSTTTILYLSLFILLFHLTTQIKAYEPEDHFTINCGTTGTVSDGDRTWTGDTDSKLLSLNNPTTTTVSATATTQAPSINTVPYSTSRLSHSEFTYSFPLTTGPKFLRLFFYPASYPEFDRTQSFFTVKSGVFTLLQNFNASLTADAEGKETTIFKEYIINVDDSQRLNLTFTPNTTSQQPNCYAFINGIEVLSMPDDLYYTASTNPGFKLVGTGTTQYSVSSKTALETDYRIKVGGQAISPRNDTGLLRIWEGHDEDYLMRPSARDDLPGDISGNMSITVNPDYVAPVQLYRTARDMGKNGTLNKMLNLTWGFQVDTGFYYMVRLHFCELDPNINEPSDRAFFIYIDGQIAEERASVLRWSKQKGVAVHRDYAVSIPLSVNQKRVNLSIQMHPYTDYKDTRFSDPFLNGLEIFKISDAGSNNLAGPNPDPIQEPGNSPVIQNGKKKKSVTVVVVAGVVSGVVVLVLIVVVLFLFLVKRKTTTQSQTKTKHSKSSATSKWGPLSFSTTKSTNTQNSSLPSDLCRQFSLVEIKSATNNFDEVFIVGVGGFGHVYKGYVDNGLTAVAIKRLKPGSQQGANEFMNEIHMLSQLRHLHLVSLIGYCNENSEMILVYDFMTRGTLRDHLYNTDNPALKWKQRLQICIGAARGLHYLHTGAKHVIIHRDVKTTNILLDEKWVAKVSDFGLSRIGPTGMSKAHVSTVVKGSVGYLDPEYYKRQRLTEKSDVYSFGVVLFEILCARPPLIRTTEKKQVSLADWARHCYKSGTLGQIVDPALKGSIAPECLRKFGEIGVSCLLDDGTQRPSMNDVVWMLEFALQLQESAEQRDENGVGMVVKRDDSDDILFSSGTSLGQVSDFNKSSGVSVTTSSGEHSSGNKESDKLMMSGTVFSEIMDPKAR 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1349g00001 897 Pfam Protein tyrosine and serine/threonine kinase 546 809 IPR001245 GO:0004672|GO:0006468
Gabi1349g00001 897 FunFam FERONIA receptor-like kinase 227 419 - -
Gabi1349g00001 897 SUPERFAMILY Protein kinase-like (PK-like) 513 815 IPR011009 -
Gabi1349g00001 897 Gene3D Transferase(Phosphotransferase) domain 1 617 841 - -
Gabi1349g00001 897 Gene3D Phosphorylase Kinase; domain 1 503 616 - -
Gabi1349g00001 897 SMART serkin_6 540 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1349g00001 897 PANTHER OS03G0124300 PROTEIN-RELATED 10 490 IPR046957 GO:0004672
Gabi1349g00001 897 FunFam Receptor-like protein kinase FERONIA 512 616 - -
Gabi1349g00001 897 ProSiteProfiles Protein kinase domain profile. 540 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1349g00001 897 FunFam Receptor-like protein kinase FERONIA 617 832 - -
Gabi1349g00001 897 MobiDBLite consensus disorder prediction 856 897 - -
Gabi1349g00001 897 Pfam Malectin-like domain 36 418 IPR024788 -
Gabi1349g00001 897 Gene3D - 228 419 - -
Gabi1349g00001 897 Gene3D - 32 198 - -
Gabi1349g00001 897 MobiDBLite consensus disorder prediction 856 882 - -
Gabi1349g00001 897 CDD STKc_IRAK 546 813 - -
Gabi1349g00001 897 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524
Gabi1349g00001 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Gabi1349g00001 897 MobiDBLite consensus disorder prediction 487 521 - -
Gabi1349g00001 897 FunFam FERONIA receptor-like kinase 33 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1349g00001 Gabi-Chr1349 14966 18506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1349g00001 28 897 Receptor kinase-like Gene Family AT3G51550 50.725 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi1349g00001 Malectin_like 2.7e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1349g00001 - - gsj:114381619 1167.53