Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1345g00004 ATGACCATTGATATGCCCCAATCCATAGCCCAAAATGTTAGGGCAAGCAGATCTTCCTTTAGCTCTAGCAATGCCAATGAGGATACCCCTGTACGCAACTATGCTTCTGTTAGCAATGATGATGACTATGACAGTGATAGCACCAATTTTGCACCACCTTGCAGCACGCCAGTGGCTGTTCCAGCAGAACTCGCTGGAGCTGTACCCTTGATTGACAGATTCCAAGTGGATGGATTTTTAAAATTAATGCAGAAACAAATTCAATCTGCTGGGAAACGTGGGCTATTTTCTAAAAGATCTATAGGTACCCAAGTTCGAGAAAAATTTACATTTGAGGACATGATGTGTTTTCAAAAGGATCCAATTCCAACCTCATTGCTTAAGATTAATGGTGATTTAGTAAGTCGGGCAACAAAATTATTCCAGATAATTTTGAAATATATGGGAGTTGATTCCTCTGATCGTGTAACTCCAATAAGCTTAGACGAACGAGTTGAGCTTGTAGGGAAACTATACAAGCAAAGTTTGAAACGTTCAGAACTCCGAGATGAACTTTTTGTTCAGATATCAAAACAAACAAGAAATAACCCTGAGAGGCAATACTTGATTAAAGCATGGGAGCTCATGTATTTATGTGCATCCTCCATGCCTTCAAGTAAAGAAATTGGGGGTTATCTATCGGAATATGTTCATAACATAGCACATGGTGTGACTACTGATCCTGAGATCCAAGCCCTTGCATTAAGTACATTAAATGTATTGAAGCGTTCTGTCAAGGCTGGTCCCAGACATATAATACCTGGGCGTGAGGAGATTGAAGCTCTGTTGACGGGGAGAAAGCTTACAACTATAGTGTTCTTCCTAGATGAAACATTTGAAGAAATTACATATGACATGTCAACTACAGTTGCTGATGCTGTTGAGGAACTTGCAGGGCTCATTAAACTGTCAACATACTCTAGCTTTAGTCTGTTTGAATGTCATAAAGTTGTTACTGGCTCCAGATCACCTGATCCTGGGAATGAGGAGTACTTTGGGTTAGATGATAACAAATATATTGGGGATCTCCTGGCTGAATTTAAAGCAGCAAAGGATCGAAGTAAGGGAGAAATCTTGCATTGTAAACTGATTTTCAAGAAAAAGTTATTTCGCGAGTCAGATGAAGCTGTGACAGATCCAATGTTTGTGATATTGTCCTATGTACAATTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTTTGTGCGTTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCTGAATCGTGCACTAACTGGAATTTACTTCTAGAGCAATTCCTGCCTAGACAAGTTTCAATGACACGAGGGAAACGGGAATGGGAGTTTGACATACTTTCTCGTTATCAGTCATTGGAGCATTTGACAAAAGATGATGCAAGACAACAATTTCTGCGTATATTGAGAGCACTTCCTTATGGGAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGACCCTATTGGGCTCCTACCTGGACGAATAATGTTGGGAATTAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTATTTTTTAAAATGCGAGTTGCAGGAGTTCTTCACATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGTGTAGCTCTTCAGACACATATAAACGATGTTATGCTGCGCCGCTATTCGAAAGCACGATCTGTGGCTACTGGTTCTTTGAATGAAGATACTTCTAGTAATTTTAAGCCTCCTAATTTGGAATTATATGAGAAGCGTGTAAAAGATTTATCAAAACTTGCTGAAGAATCTCAAAGAAATGCTGATCAAGTGCTTGAAGAATTGCGTGAGAAGCAAAAACAAGAAGAGAAAATGCAAGAAGAATTGGAGGGCTTGAAAGAATCCTTAAAAACTGATAAGCAAAATCTTGAGGCTGTTACAAGTGAGCGGGATAGGCTTAGATCATTATGCAATGAAAAAGATAAGGCACTACAGGTTACAATTCTAGAGAAAAGGAACATGGAAGCAAGGGTGGCCAAGTTGAATAATCTAGTGATTGAGAACACTTCCAAAAAGGATCTTGTTGGAGCAGCTAATAACAGAATGCTACCAAAGCTTGAAGATGAGCTAAAACTTTGTAAAGATGAGCTGCTTGCAGCTGAAGAAACTATTAGAAGGTTGTCAAGTGAAAAATTGATTTTGGAACAGAAGCTAATTGCGCATGAGAAAAGGAATGCTGAAGAGATTAGTTCTCTTCAACGGAAACTCGAGCAAGAATGCAAAACTGGGAAATCTGAAGTTTATGACCTTGAAAGGAAGCTAGAAGGATGTATACAAGAATTAGTGGCTGCTAAGTCTGCTATTTCAGTAAAGGATTCTGAGTTGGCTGCGTTGCAGAATGAATTGAAGGAACTAGAAGAATTGAGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAAACAGCTGCCATACTGAAGATGCAAGGAGCTCAACTAGCTGAAATGGAAGTGCTATATAAGGAAGAGCAGGTTCTAAGGAAGCGTTATTTTAATACAATAGAAGATATGAAAGGCAAGATCAGAGTTTATTGTCGACTAAGACCTCTTAGTGAAAAAGAGATTGCTGAGAAAGAAAGAGAAGCTCTTACTACAGTAGATGAGTTTACAGTTGAATATCTATGGAAAGATGATAAACCAAAGCAGCACATATATGATCGCGTTTTTGATGGTGATGCAACTCAAGAAACCGTATTTGAGGATACAAGGTATTTGGTGCAATCTGCGGTAGATGGTTATAATGTCTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATATGAAAACAACCCTGGAATTACCCCGCGTGCTACTGCAGAACTTTTTAGAATTTTGAAGAGAGATAATAACAAGTATTCTTTTTCATTGAAGGCATACATGGTGGAGTTATATCAAGATACCCTTATAGATCTTCTGTTACCTAAGAATGCAAAGCATTTAAAATTGGATATCAAGAAGGATCCGGCGGGAATGGTTGTTGTGGAAAATGTAACAGTTGTGCCAATTTCTACAATAGAAGAATTAAATAGCATAATACAAAGAGGATCTGAACGGAGGCATATATCAGGAACCCAAATGAATGAAGAAAGTTCAAGATCTCATCTTATTCTATCAATTGTAATTGAAAGCACTGACCTTCAAAGTCAATCAGTTGCAAGGGGAAAGCTGAGTTTTGTGGATCTAGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACAGGTAGTCAACTTAAGGAAGCCCAAAGTATCAATAAGTCATTATCAGCACTTGGAGATGTTATTAGTGCTTTGTCTTCTGGTGGTCAACACACACCTTACAGGAATCACAAGTTAACTATGTTGATGAGTGATTCTCTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCAGCAGAATCAAGCTTGGATGAGACACATAACTCTCTCATGTATGCATCACGAGTGAGATCCATTGTGAATGACCCAAGCAAAAATGTGGATTCAAAAGAGATAGCAAGACTGAAGAAATCGGTTGCCTATTGGAAAGGGCAAGCTGGTAGAAGACTTGAGGATGAATTTTTGGAAGAAATTCAAGAAGATCGACCAAATAAAGAGAGGGTGGATAATCGTAGTAGCTTAGGTAAGTAG 3813 0.3863 MTIDMPQSIAQNVRASRSSFSSSNANEDTPVRNYASVSNDDDYDSDSTNFAPPCSTPVAVPAELAGAVPLIDRFQVDGFLKLMQKQIQSAGKRGLFSKRSIGTQVREKFTFEDMMCFQKDPIPTSLLKINGDLVSRATKLFQIILKYMGVDSSDRVTPISLDERVELVGKLYKQSLKRSELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMPSSKEIGGYLSEYVHNIAHGVTTDPEIQALALSTLNVLKRSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSTYSSFSLFECHKVVTGSRSPDPGNEEYFGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVILSYVQLQHDYILGNYPIGRDDAAQLCALQILAEIGFVSTPESCTNWNLLLEQFLPRQVSMTRGKREWEFDILSRYQSLEHLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIMLGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSVATGSLNEDTSSNFKPPNLELYEKRVKDLSKLAEESQRNADQVLEELREKQKQEEKMQEELEGLKESLKTDKQNLEAVTSERDRLRSLCNEKDKALQVTILEKRNMEARVAKLNNLVIENTSKKDLVGAANNRMLPKLEDELKLCKDELLAAEETIRRLSSEKLILEQKLIAHEKRNAEEISSLQRKLEQECKTGKSEVYDLERKLEGCIQELVAAKSAISVKDSELAALQNELKELEELREMKEDIDRKNEQTAAILKMQGAQLAEMEVLYKEEQVLRKRYFNTIEDMKGKIRVYCRLRPLSEKEIAEKEREALTTVDEFTVEYLWKDDKPKQHIYDRVFDGDATQETVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGYENNPGITPRATAELFRILKRDNNKYSFSLKAYMVELYQDTLIDLLLPKNAKHLKLDIKKDPAGMVVVENVTVVPISTIEELNSIIQRGSERRHISGTQMNEESSRSHLILSIVIESTDLQSQSVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALGDVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESSLDETHNSLMYASRVRSIVNDPSKNVDSKEIARLKKSVAYWKGQAGRRLEDEFLEEIQEDRPNKERVDNRSSLGK 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1345g00004 1270 SMART B41_5 277 501 IPR019749 -
Gabi1345g00004 1270 ProSiteProfiles FERM domain profile. 281 595 IPR000299 GO:0005856
Gabi1345g00004 1270 Pfam MyTH4 domain 170 274 IPR000857 GO:0005856
Gabi1345g00004 1270 FunFam Kinesin-like calmodulin binding protein 384 495 - -
Gabi1345g00004 1270 Gene3D - 499 607 IPR011993 -
Gabi1345g00004 1270 SMART kinesin_4 890 1221 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 SUPERFAMILY PH domain-like 501 589 - -
Gabi1345g00004 1270 CDD KISc_C_terminal 890 1215 - -
Gabi1345g00004 1270 PANTHER MYOSIN VII, XV 3 898 - -
Gabi1345g00004 1270 SUPERFAMILY Prismane protein-like 835 896 IPR011254 GO:0003824|GO:0016491
Gabi1345g00004 1270 CDD FERM_B-lobe 398 494 IPR019748 -
Gabi1345g00004 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 96 278 - -
Gabi1345g00004 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 892 1239 IPR027417 -
Gabi1345g00004 1270 Gene3D - 393 494 IPR014352 -
Gabi1345g00004 1270 FunFam Kinesin-like calmodulin-binding protein 836 1215 - -
Gabi1345g00004 1270 Pfam Kinesin motor domain 898 1213 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 Coils Coil 735 791 - -
Gabi1345g00004 1270 Gene3D - 280 384 - -
Gabi1345g00004 1270 Gene3D - 1216 1264 - -
Gabi1345g00004 1270 SUPERFAMILY Second domain of FERM 379 496 IPR035963 -
Gabi1345g00004 1270 SMART MyTH4_1 117 276 IPR000857 GO:0005856
Gabi1345g00004 1270 ProSiteProfiles Kinesin motor domain profile. 892 1213 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 499 608 - -
Gabi1345g00004 1270 Coils Coil 820 857 - -
Gabi1345g00004 1270 CDD FERM_C_KCBP 498 604 - -
Gabi1345g00004 1270 ProSitePatterns Kinesin motor domain signature. 1113 1124 IPR019821 GO:0003777|GO:0005524|GO:0007018
Gabi1345g00004 1270 PRINTS Kinesin heavy chain signature 964 985 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 PRINTS Kinesin heavy chain signature 1114 1132 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 PRINTS Kinesin heavy chain signature 1083 1100 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 PRINTS Kinesin heavy chain signature 1163 1184 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi1345g00004 1270 MobiDBLite consensus disorder prediction 1 50 - -
Gabi1345g00004 1270 Gene3D MyTH4 domain 93 278 IPR038185 -
Gabi1345g00004 1270 ProSiteProfiles MyTH4 domain profile. 117 276 IPR000857 GO:0005856
Gabi1345g00004 1270 Gene3D Kinesin motor domain 834 1214 IPR036961 -
Gabi1345g00004 1270 Coils Coil 619 681 - -
Gabi1345g00004 1270 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 280 383 - -
Gabi1345g00004 1270 Pfam FERM central domain 387 501 IPR019748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1345g00004 Gabi-Chr1345 19720 31394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1345g00004 51 1264 Calmodulin-binding Proteins AT5G65930 74.260 0.0 1847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1345g00004 - - adu:107475586 2053.87